Estructura, Función y Manipulación de Péptidos y Proteínas
Genómica y transcriptomica de patógenos y parásitos
Número de registros: 6
  • Vencidos
  • Exploración del espacio de variantes del dominio de unión al receptor (ace2) del virus sars-cov-2 mediante redes neurales, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2022 - 2024
  • Evolución dirigida del dominio de prefenato deshidrogenasa de la proteína t de e. coli, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2016 - 2019
  • Evolución dirigida de proteínas, PRESUPUESTO UNAM, 2014 - 2020
  • Estudios evoulutivos y mecanísticos de la enzima bifuncional fosforibosil isomerasa (pria) presente en bacterias del grupo de los actinomicetos., CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2005 - 2006
  • Diseño y desarrollo de un andamiaje estable para evolución dirigida de actividades catalíticas., CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2004 - 2007
  • Evolución dirigida de proteínas: desarrollo de conceptos y metodologías para la generación de reconocimiento y catálisis de novo, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 1997 - 2002

Nivel D del PRIDE
Nivel Investigador Emérito del SNII
  • Doctorado, en Investigacion Biomedica Basica, Instituto de Investigaciones Biomedicas-CEINGEBI-UNAM (1984)

  • Maestría, en Investigacion Biomedica Basica, Instituto de Investigaciones Biomedicas-UNAM (1981)

  • Licenciatura, Química, Universidad Iberoamericana (1978)

  • Premio Nacional de Química "Andrés Manuel del Río", Sociedad Química de México, 1999

1 - Galeana Cadena, David (2024). Metagenoma en muestra clinica de pacientes con infecciones del tracto respiratorio. Instituto de Biotecnologia, Doctorado en Ciencias Bioquimicas, UNAM.
3 - Guerrero Corona, Diego (2019). Microbioma de tracto respiratorio en pacientes con infecciones respiratorias agudas. INMEGEN, Maestria en Ciencias Bioquimicas, UNAM. *
6 - Lopez de los Santos, Yossef (2014). Ingenieria de las proteinas del sistema pts en escherichia coli. Instituto de Biotecnologia, Doctorado en Ciencias Bioquimicas, UNAM.
7 - Cruz Correa, Omar Fernando (2013). Desarrollo de pruebas genomicas prioritarias para la salud publica de Mexico. Instituto de Biotecnologia, Maestria en Ciencias Bioquimicas, UNAM.
8 - Cantu Alessio Robles, Vito Adrian (2013). Analisis de una libreria binaria de mutantes de NPR. Instituto de Biotecnologia, Maestria en Ciencias, UNAM.
13 - Riano Umbarila, Lidia (2000). Desarrollo de un sistema de seleccion para la actividad de aldolasa. Instituto de Biotecnologia, Maestria en Ciencias (Bioquimica), UNAM.
16 - Chihu Amparan, Lilia (1998). Mutagenesis combinatoria de la region del sitio activo de la beta lactamasa tem1 de Escherichia coli. Instituto de Biotecnologia, Maestria en Biotecnologia, UNAM.
Asesor: Soberon Mainero, Francisco Xavier, Fuchs Gomez, Lidia Yolanda

18 - Flores Soto, Humberto (1995). Analisis del reconocimiento molecular por medio de ingenieria de proteinas. Instituto de Biotecnologia, Doctorado en Biotecnologia, UNAM.
19 - Cota Segura, Ernesto (1995). Estudio de regiones conservadas de la betalactamasa clase A de E. coli. Instituto de Biotecnologia, Maestria en Biotecnologia, UNAM.
24 - Osuna Quintero, Joel (1992). Analisis del sitio activo de enzimas mediante mutagenesis combinatoria. Instituto de Biotecnologia, Doctor en Investigacion Biomedica Basica, UNAM.
27 - Osuna Quintero, Joel (1989). Aislaminieto de un fragmento inmunogenico de toxina tetanica. CEINGEBI, Maestria en Investigacion Biomedica Basica, UNAM.
28 - Cruz Reyes, Jorge Armando (1989). Un sistema experimental para el aislamiento del sustrato minimo de replicacion en plasmidos tipo Col E1. CEINGEBI, Licenciatura en Investigacion Biomedica Basica, UNAM.
31 - Lomeli Buyoli, Hilda Maria (1984). Introduccion de un sitio de restriccion adyacente al origen de replicacion del plasmido pBR327. Escuela Nacional de Estudios Superiores Zaragoza, Quimico Farmaceutico Biologo, UNAM. *
32 - Cuevas Guerrero, Mario Alberto (1983). Sintesis de polinucleotidos mediante tecnica estandarizada. FES Zaragoza, Quimico Farmaceutico Biologo, UNAM. *
* Indica publicación con otra institución de adscripción
Total de publicaciones: 141
  • Tipo
  • Fecha
Open Access Artículo
33 - Martinez-Flores,I., Bustos,P., Santamaria,R.I., Aguayo-Gonzalez,A., Silva-Herzog,E., Soberon,X., Gonzalez,V., Cabrera-Contreras,R. (2026). Comparative genomics of methicillin-resistant and -susceptible Staphylococcus aureus from Mexico City hospitals. Microbiology Spectrum, 14 (4), e0314025.
Artículo
34 - Oropeza-Valdez,J.J., Padron-Manrique,C., Arellano-Villavicencio,J.E., Vazquez-Jimenez,A., Hernandez-Juarez,L.E., Soberon,X., Reyes-Escogido,M.L., Guardado-Mendoza,R., Resendis-Antonio,O. (2026). Digital modeling of metformin and diet interactions on gut-microbiota metabolism in prediabetic patients. Computational and Structural Biotechnology Journal, 31, 250-262.
Open Access Artículo
35 - Alvarado-Pena,N., Munoz-Torrico,M., Narvaez-Diaz,L., Mejia-Ponce,P.M, Becerril-Vargas,E., Zuniga,J., Muniz-Salazar,R., Laniado-Laborin,R., Licona-Cassani,C., Soberon,X., Silva-Herzog,E. (2025). Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes. Frontiers in Microbiology, 16, 1666838.
Open Access Artículo
36 - Anwar,S., Lamaudiere,M., Hassall,J., Dehinsilu,J., Bhuller,R.K., Hold,G.L., Va­zquez-Campos,X., Mahnert,A., Moissl-Eichinger,C., Galle,B., Kainz,G., Pjevac,P., Hausmann,B., Schwarz,J., Kohl,G., Berry,D., Vancuren,S.J., len-Vercoe,E., Nielsen,N., Sorensen,N., Eklund,A., Nielsen,H.B., Riedel,R., Krause,J.L., Chang,H.-D., Park,S., Song,H.-Y., Seo,H., Ul-Haq,A., Kim,S., Kwon,Y., Park,S., Soberon,X., Silva-Herzog,E., Verlouw,J.A.M., Arp,P., Jhamai,M., Kraaij,R., Geelen,A.R., Ducarmon,Q.R., Smits,W.K., Kuijper,E.J., Zwittink,R.D., van,Best N., Penders,J., Le,G., Driessen,C., Kool,J., Shetty,S.A., Fuentes,S., Demirci,M., Yigin,A., Whalley,C., Beggs,A.D., Quince,C., James,R., Raguideau,S., Gordon,M., Mate,R., Fritzsche,M., Danckert,N.P., Blanco,J.M., Marchesi,J.R., Rauch,M., Williamson,R.A., Van't Wout,A.B., Kritz,A., Rosecker,S., Stevens,R., Laws,L., Sayavedra,L., Romano,S., Telatin,A., Baker,D., Narbad,A., Servetas,S.L., Kralj,J.G., Forry,S.P., Hunter,M.E., Dootz,J.N., Jackson,S.A., Mason,C.E., Butler,D.J., Mozsary,C., Foox,J., Damle,N., Resh,A., Busswitz,A., Lenz,P., Sontag,S., Cross,A., Sanchez,C., Guo,M., Olson,K., Smith,E.A., La Reau,A.J., Ward,T., Kuersten,S., Hyde,F., Khrebtukova,I., Schroth,G., Rijpkema,S., Amos,G.C.A., Sergaki,C. (2025). DNA reference reagents isolate biases in microbiome profiling: a global multi-lab study. mSystems, 10 (11), e00466-25.
Open Access Artículo
39 - Galeana-Cadena,D., Ramirez-Martinez,G., Choreno-Parra,J.A., Silva-Herzog,E., Hernandez-Cardenas,C.M., Soberon,X., Zuniga,J. (2024). Microbiome in the Nasopharynx: Insights into the Impact of COVID-19 Severity. Heliyon, 10 (10), e31562.
Open Access Artículo
40 - Oropeza-Valdez,J.J., Padron-Manrique,C., Vazquez-Jimenez,A., Soberon,X., Resendis-Antonio,O. (2024). Exploring metabolic anomalies in COVID-19 and post-COVID-19: a machine learning approach with explainable artificial intelligence. Frontiers in Molecular Biosciences, 11, 1429281.
Open Access Revisión
42 - Alvarado-Pena,N., Galeana-Cadena,D., Gomez-Garcia,I.A, Soberon-Mainero,X, Silva-Herzog,E (2023). The microbiome and the gut-lung axis in tuberculosis: interplay in the course of disease and treatment. Frontiers in Microbiology, 14, 1237998.
Open Access Artículo
43 - Barbosa-Amezcua,M., Cuevas-Cordoba,B., Fresno,C., Haase-Hernandez,J.I., Carrillo-Sanchez,K., Mata-Rocha,M., Munoz-Torrico,M., Backer,C., Gonzalez-Covarrubias,V., Alaez-Verson,C., Soberon,X. (2022). Rapid Identification of Drug Resistance and Phylogeny in M. tuberculosis, Directly from Sputum Samples. Microbiology Spectrum, 10 (5), e0125222.
Open Access Artículo
44 - Martinez-Magana,J.J., Genis-Mendoza,A.D., Gonzalez-Covarrubias,V., Juarez-Rojop,I.E., Tovilla-Zarate,C.A., Soberon,X., Lanzagorta,N., Nicolini,H. (2022). Association of FAAH p.Pro129Thr and COMT p.Ala72Ser with schizophrenia and comorbid substance use through next-generation sequencing: an exploratory analysis. Brazilian Journal of Psychiatry, 44 (2), 164-170. *
Open Access Artículo
45 - Aguilar-Ordonez,I., Perez-Villatoro,F., Garcia-Ortiz,H., Barajas-Olmos,F., Ballesteros-Villascan,J., Gonzalez-Buenfil,R., Fresno,C., Garciarrubio,A., Fernandez-Lopez,J.C., Tovar,H., Hernandez-Lemus,E., Orozco,L., Soberon,X., Morett,E. (2021). Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights. PLoS ONE, 16 (4), e0249773, [correction May 25 2022].
Open Access artículo
46 - Cuevas-Cordoba,B., Fresno,C., Haase-Hernandez,J.I., Barbosa-Amezcua,M., Mata-Rocha,M., Munoz-Torrico,M., Salazar-Lezama,M.A., Martinez-Orozco,J.A., Narvaez-Diaz,L.A., Salas-Hernandez,J., Gonzalez-Covarrubias,V., Soberon,X. (2021). A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples. PLoS ONE, 16 (10), e0258774. *
Artículo
47 - Gonzalez-Covarrubias,V,, Sanchez-Ibarra,H., Lozano-Gonzalez, K., Villicana, S., Texis,T., Rodriguez-Dorantes,M., Cortes-Ramirez,S., Lavalle-Gonzalez,F,, Soberon,X., Barrera-Saldana,H. (2021). Transporters, TBC1D4, and ARID5B Variants to Explain Glycated Hemoglobin Variability in Patients with Type 2 Diabetes. Pharmacology, 106 (11-12), 588-596.
Open Access Artículo
49 - Valdez-Palomares,F., Munoz-Torrico,M., Palacios-Gonzalez,B., Soberon,X., Silva-Herzog,E. (2021). Altered Microbial Composition of Drug-Sensitive and Drug-Resistant TB Patients Compared with Healthy Volunteers. Microorganisms, 9 (8), 1762.
Open Access Revisión
50 - Gonzalez-Covarrubias,V., Lozano,K., Texis,T., Guzman-Cruz,C.K., Rodriguez-Dorantes,M., Rubio-Carrasco,K., Mendez-Lorenzo,L.H., Soberon,X. (2020). Pharmacogenomics: Current Actionable Variants. Revista de Investigacion Clinica, 73 (3). *
Open Access Artículo
51 - Cabrera-Contreras,R., Santamaria,R.I., Bustos,P., Martinez-Flores,I., Melendez-Herrada,E., Morelos-Ramirez,R., Barbosa-Amezcua,M., Gonzalez-Covarrubias,V., Silva-Herzog,E., Soberon,X., Gonzalez,V. (2019). Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children's Hospital in Mexico City in an eight-years survey. PeerJ, 7, e8068. *
Open Access Artículo
52 - Flannick,J., Mercader,J.M., Fuchsberger,C., Udler,M.S., Mahajan,A., Wessel,J., Teslovich,T.M., Caulkins,L., Koesterer,R., Barajas-Olmos,F., Blackwell,T.W., Boerwinkle,E., Brody,J.A., Centeno-Cruz,F., Chen,L., Chen,S., Contreras-Cubas,C., Cordova,E., Correa,A., Cortes,M., Defronzo,R.A., Dolan,L., Drews,K.L., Elliott,A., Floyd,J.S., Gabriel,S., Garay-Sevilla,M.E., Garcia-Ortiz,H., Gross,M., Han,S., Heard-Costa,N.L., Jackson,A.U., Jorgensen,M.E., Kang,H.M., Kelsey,M., Kim,B.J., Koistinen,H.A., Kuusisto,J., Leader,J.B., Linneberg,A., Liu,C.T., Liu,J., Lyssenko,V., Manning,A.K., Marcketta,A., Malacara-Hernandez,J.M., Martinez-Hernandez,A., Matsuo,K., Mayer-Davis,E., Mendoza-Caamal,E., Mohlke,K.L., Morrison,A.C., Ndungu,A., Ng,M.C.Y., O'Dushlaine,C., Payne,A.J., Pihoker,C., Post,W.S., Preuss,M., Psaty,B.M., Vasan,R.S., Rayner,N.W., Reiner,A.P., Revilla-Monsalve,C., Robertson,N.R., Santoro,N., Schurmann,C., So,W.Y., Soberon,X., Stringham,H.M., Strom,T.M., Tam,C.H.T., Thameem,F., Tomlinson,B., Torres,J.M., Tracy,R.P., van Dam,R.M., Vujkovic,M., Wang,S., Welch,R.P., Witte,D.R., Wong,T.Y., Atzmon,G., Barzilai,N., Blangero,J., Bonnycastle,L.L., Bowden,D.W., Chambers,J.C., Chan,E., Cheng,C.Y., Cho,Y.S., Collins,F.S., de Vries,P.S., Duggirala,R., Glaser,B., Gonzalez,C., Gonzalez,M.E., Groop,L., Kooner,J.S., Kwak,S.H., Laakso,M., Lehman,D.M., Nilsson,P., Spector,T.D., Tai,E.S., Tuomi,T., Tuomilehto,J., Wilson,J.G., Aguilar-Salinas,C.A., Bottinger,E., Burke,B., Carey,D.J., Chan,J.C.N., Dupuis,J., Frossard,P., Heckbert,S.R., Hwang,M.Y., Kim,Y.J., Kirchner,H.L., Lee,J.Y., Lee,J., Loos,R.J.F., Ma,R.C.W., Morris,A.D., O'Donnell,C.J., Palmer,C.N.A., Pankow,J., Park,K.S., Rasheed,A., Saleheen,D., Sim,X., Small,K.S., Teo,Y.Y., Haiman,C., Hanis,C.L., Henderson,B.E., Orozco,L., Tusie-Luna,T., Dewey,F.E., Baras,A., Gieger,C., Meitinger,T., Strauch,K., Lange,L., Grarup,N., Hansen,T., Pedersen,O., Zeitler,P., Dabelea,D., Abecasis,G., Bell,G.I., Cox,N.J., Seielstad,M., Sladek,R., Meigs,J.B., Rich,S.S., Rotter,J.I., Altshuler,D., Burtt,N.P., Scott,L.J., Morris,A.P., Florez,J.C., McCarthy,M.I., Boehnke,M. (2019). Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls. Nature, 570 (7759), 71-76. *
Open Access Artículo
53 - Gonzalez-Covarrubias,V., Morales-Franco,M., Cruz-Correa,O.F., Martinez-Hernandez,A., Garcia-Ortiz,H., Barajas-Olmos,F., Genis-Mendoza,A.D., Martinez-Magana,J.J., Nicolini,H., Orozco,L., Soberon,X. (2019). Variation in Actionable Pharmacogenetic Markers in Natives and Mestizos From Mexico. Frontiers in Pharmacology, 10, 1169. *
Open Access Artículo
54 - Madrazo-Moya,C.F., Cancino-Munoz,I., Cuevas-Cordoba,B., Gonzalez-Covarrubias,V., Barbosa-Amezcua,M., Soberon,X., Muniz-Salazar,R., Martinez-Guarneros,A., Backer,C., Zarrabal-Meza,J., Sampieri-Ramirez,C., Enciso-Moreno,A., Lauzardo,M., Comas,I., Zenteno-Cuevas,R. (2019). Whole genomic sequencing as a tool for diagnosis of drug and multidrug-resistance tuberculosis in an endemic region in Mexico. PLoS ONE, 14 (6), e0213046. *
Open Access Artículo
55 - Martinez-Magana,J.J., Genis-Mendoza,A.D., Gonzalez-Covarrubias,V., Jimenez-Guenchi,J., Galindo-Chavez,A.G., Roche-Bergua,A., Castaneda-Gonzalez,C., Lanzagorta,N., Soberon,X., Nicolini,H. (2019). Exploratory analysis of rare and novel variants in Mexican patients diagnosed with schizophrenia and dementia. Revista de Investigacion Clinica, 71 (4), 246-254. *
Artículo
56 - Ayon-Nunez, D.A., Fragoso, G., Espitia, C., Garcia-Varela, M., Soberon, X., Rosas, G., Laclette, J.P., Bobes, R.J. (2018). Identification and characterization of Taenia solium enolase as a plasminogen-binding protein. Acta Tropica, 182, 69-79. *
Open Access Artículo
57 - Flores-Bautista, J., Navarrete-Perea, J., Fragoso, G., Flisser, A., Soberon, X., Laclette, J.P. (2018). Fate of uptaken host proteins in Taenia solium and Taenia crassiceps cysticerci. Bioscience Reports, 38 (4), BSR20180636. *
Open Access Artículo
58 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A. (2017). A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data. PeerJ, 5, e4133.
Open Access Artículo
59 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E. (2017). Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen. Infection and Immunity, 85, e00395-17.
Artículo
60 - Cruz-Correa, O.F., Leon-Cachon, R.B., Barrera-Saldana, H.A., Soberon, X. (2017). Prediction of atorvastatin plasmatic concentrations in healthy volunteers using integrated pharmacogenetics sequencing. Pharmacogenomics, 18 (2), 121-131.
Open Access Artículo
61 - Gonzalez-Covarrubias, V., Urena-Carrion, J., Villegas-Torres, B., Cossio-Aranda, J.E., Trevethan-Cravioto, S., Izaguirre-Avila, R., Fiscal-Lopez, O.J., Soberon, X. (2017). Pharmacogenetic Variation in Over 100 Genes in Patients Receiving Acenocumarol. Frontiers in Pharmacology, 8, 863. *
Artículo in consortium
62 - Marquez-Luna,C., Loh,P.R., Price,A.L., South Asian Type 2 Diabet SAT2D, SIGMA Type 2 Diabet Consortium, Soberon,X. (2017). Multiethnic polygenic risk scores improve risk prediction in diverse populations. Genetic Epidemiology, 41 (8), 811-823. *
Open Access Artículo
63 - Mercader, J.M., Liao, R.G., Davis, A., Dymek, Z., Estrada, K., Tukiainen, T., Huerta-Chagoya, A., Moreno-Macias, H., Jablonski, K.A., Hanson, R.L., Walford, G.A., Moran, I., Chen, L., Agarwala, V., Ordonez-Sanchez, M.L., Rodriguez-Guillen, R., Rodriguez-Torres, M., Segura-Kato, Y., Garcia-Ortiz, H., Centeno-Cruz, F., Barajas-Olmos, F., Caulkins, L., Puppala, S., Fontanillas, P., Williams, A., Bonas-Guarch, S., Hartl, C., Ripke, S., Tooley, K., Lane, J., Zerrweck, C., Martinez-Hernandez, A., Cordova, E.J., Mendoza-Caamal, E., Contreras-Cubas, C., Gonzalez-Villalpando, M.E., Cruz-Bautista, I., Munoz-Hernandez, L., Gomez-Velasco, D., Alvirde, U., Henderson, B.E., Wilkens, L.R., Le, Marchand L., Arellano-Campos, O., Riba, L., Harden, M., Platform, B.G., Gabriel, S., Abboud, H.E., Cortes, M.L., Revilla-Monsalve, C., Islas-Andrade, S., Soberon, X., Curran, J.E., Jenkinson, C.P., Defronzo, R.A., Lehman, D.M., Hanis, C.L., Bell, G.I., Boehnke, M., Blangero, J., Duggirala, R., Saxena, R., MacArthur, D., Ferrer, J., McCarroll, S.A., Torrents, D., Knowler, W.C., Baier, L.J., Burtt, N., Gonzalez-Villalpando, C., Haiman, C.A., Aguilar-Salinas, C.A., Tusie-Luna, T., Flannick, J., Jacobs, S.B.R., Orozco, L., Altshuler, D., Florez, J.C. (2017). A Loss-Of-Function Splice Acceptor Variant in IGF2 is Protective for Type 2 Diabetes. Diabetes, 66 (11), 2903-2914. *
Open Access Artículo
64 - Navarrete-Perea, J., Isasa, M., Paulo, J.A., Corral-Corral, R., Flores-Bautista, J., Hernandez-Tellez, B., Bobes, R.J., Fragoso, G., Sciutto, E., Soberon, X., Gygi, S.P., Laclette, J.P. (2017). Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs. PLoS Neglected Tropical Diseases, 11 (9), e0005962.
Artículo
65 - Navarrete-Perea, J., Moguel, B.A., Bobes, R.J., Villalobos, N., Carrero, J.C., Sciutto, E., Soberon, X., Laclette, J.P. (2017). Protein profiles of Taenia solium cysts obtained from skeletal muscles and the central nervous system of pigs: Search for tissue-specific proteins. Experimental Parasitology, 172, 23-29.
Open Access Artículo
66 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X. (2017). Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
Open Access Artículo in consortium
67 - Rusu,V., Hoch,E., Mercader,J.M., Tenen,D.E., Gymrek,M., Hartigan,C.R., Deran,M., von Grotthuss,M., Fontanillas,P., Spooner,A., Guzman,G., Deik,A.A., Pierce,K.A., Dennis,C., Clish,C.B., Carr,S.A., Wagner,B.K., Schenone,M., Ng,M.C.Y., Chen,B.H., Centeno-Cruz,F., Zerrweck,C., Orozco,L., Altshuler,D.M., Schreiber,S.L., Florez,J.C., Jacobs,S.B.R., Lander,E.S., MEDIA Consortium, SIGMA T2D Consortium, Soberon,X. (2017). Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms. Cell, 170 (1), 199-+. *
Artículo
69 - Gonzalez-Covarrubias,V., Martinez-Magana,J.J., Coronado-Sosa,R., Villegas-Torres,B., Genis-Mendoza,A.D., Canales-Herrerias,P., Nicolini,H., Soberon,X. (2016). Exploring Variation in Known Pharmacogenetic Variants and its Association with Drug Response in Different Mexican Populations. Pharmaceutical Research, 33 (11), 2644-2652. *
Open Access Artículo in consortium
70 - Lek,M., Karczewski,K.J., Minikel,E.V., Samocha,K.E., Banks,E., Fennell,T., O'Donnell-Luria,A.H., Ware,J.S., Hill,A.J., Cummings,B.B., Tukiainen,T., Birnbaum,D.P., Kosmicki,J.A., Duncan,L.E., Estrada,K., Zhao,F.M., Zou,J., Pierce-Hollman,E., Berghout,J., Cooper,D.N., Deflaux,N., DePristo,M., Do,R., Flannick,J., Fromer,M., Gauthier,L., Goldstein,J., Gupta,N., Howrigan,D., Kiezun,A., Kurki,M.I., Moonshine,A.L., Natarajan,P., Orozeo,L., Peloso,G.M., Poplin,R., Rivas,M.A., Ruano-Rubio,V., Rose,S.A., Ruderfer,D.M., Shakir,K., Stenson,P.D., Stevens,C., Thomas,B.P., Tiao,G., Tusie-Luna,M.T., Weisburd,B., Won,H.H., Yu,D.M., Altshuler,D.M., Ardissino,D., Boehnke,M., Danesh,J., Donnelly,S., Elosua,R., Florez,J.C., Gabriel,S.B., Getz,G., Glatt,S.J., Hultman,C.M., Kathiresan,S., Laakso,M., NcCarroll,S., McCarthy,M.I., McGovern,D., McPherson,R., Neale,B.M., Palotie,A., Purcell,S.M., Saleheen,D., Scharf,J.M., Sklar,P., Sullivan,P.F., Tuomilehto,J., Tsuang,M.T., Watkins,H.C., Wilson,J.G., Daly,M.J., Macarthur,D.G., Exome Aggregation Consortium, Soberon,X. (2016). Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536 (7616), 285-+. *
Artículo
71 - Navarrete-Perea,J., Toledano-Magana,Y., Torre,P., Sciutto,E., Bobes,R.J., Soberon,X., Laclette,J.P. (2016). Role of porcine serum haptoglobin in the host-parasite relationship of Taenia solium cysticercosis. Molecular and Biochemical Parasitology, 207 (2), 61-67.
Open Access Revisión
Open Access Artículo
73 - Gomez,S., Adalid-Peralta,L., Palafox-Fonseca,H., Cantu-Robles,V.A., Soberon,X., Sciutto,E., Fragoso,G., Bobes,R.J., Laclette,J.P., Yauner,L.D., Ochoa-Leyva,A. (2015). Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR). Scientific Reports, 5, 9683 [erratum en vol 5 (12385) ].
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74 - Villegas-Torres,B., Sanchez-Giron,F., Jaramillo-Villafuerte,K., Soberon,X., Gonzalez-Covarrubias,V. (2015). Genotype frequencies of VKORC1 and CYP2C9 in Native and Mestizo populations from Mexico, potential impact for coumarin dosing. Gene, 558 (2), 235-240. *
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75 - Estrada,K., Aukrust,I., Bjorkhaug,L., Burtt,N.P., Mercader,J.M., Garcia-Ortiz,H., Huerta-Chagoya,A., Moreno-Macias,H., Walford,G., Flannick,J., Williams,A.L., Gomez-Vazquez,M.J., Fernandez-Lopez,J.C., Martinez-Hernandez,A., Centeno-Cruz,F., Mendoza-Caamal,E., Revilla-Monsalve,C., Islas-Andrade,S., Cordova,E.J., Soberon,X., Gonzalez-Villalpando,M.E., Henderson,E., Wilkens,L.R., Le Marchand,L., Arellano-Campos,O., Ordonez-Sanchez,M.L., Rodriguez-Torres,M., Rodriguez-Guillen,R., Riba,L., Najmi,L.A., Jacobs,S.B., Fennell,T., Gabriel,S., Fontanillas,P., Hanis,C.L., Lehman,D.M., Jenkinson,C.P., Abboud,H.E., Bell,G.I., Cortes,M.L., Boehnke,M., Gonzalez-Villalpando,C., Orozco,L., Haiman,C.A., Tusie-Luna,T., Aguilar-Salinas,C.A., Altshuler,D., Njolstad,P.R., Florez,J.C., Macarthur,D.G. (2014). Association of a Low-Frequency Variant in HNF1A With Type 2 Diabetes in a Latino Population. JAMA, 311 (22), 2305-2314. *
Open Access Artículo
76 - Majithia,A.R., Flannick,J., Shahinian,P., Guo,M., Bray,M.A., Fontanillas,P., Gabriel,S.B., Rosen,E.D., Altshuler,D., SIGMA T2D Consortium, Soberon,X. (2014). Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes. Proceedings of the National Academy of Sciences of the United States of America, 111 (36), 13127-13132. *
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77 - Moreno-Estrada,A., Gignoux,C.R., Fernandez-Lopez,J.C., Zakharia,F., Sikora,M., Contreras,A.V., Acuna-Alonzo,V., Sandoval,K., Eng,C., Romero-Hidalgo,S., Ortiz-Tello,P., Robles,V., Kenny,E.E., Nuno-Arana,I., Barquera-Lozano,R., Macin-Perez,G., Granados-Arriola,J., Huntsman,S., Galanter,J.M., Via,M., Ford,J.G., Chapela,R., Rodriguez-Cintron,W., Rodriguez-Santana,J.R., Romieu,I., Sienra-Monge,J.J., del Rio-Navarro,B., London,S.J., Ruiz-Linares,A., Garcia-Herrera,R., Estrada,K., Hidalgo-Miranda,A., Jimenez-Sanchez,G., Carnevale,A., Soberon,X., Canizales-Quinteros,S., Rangel-Villalobos,H., Silva-Zolezzi,I., Burchard,E.G., Bustamante,C.D. (2014). The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science, 344 (6189), 1280-1285. *
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78 - Williams,A.L., Jacobs,S.B., Moreno-Macias,H., Huerta-Chagoya,A., Churchhouse,C., Marquez-Luna,C., Garcia-Ortiz,H., Gomez-Vazquez,M.J., Burtt,N.P., Aguilar-Salinas,C.A., Gonzalez-Villalpando,C., Florez,J.C., Orozco,L., Haiman,C.A., Tusie-Luna,T., Altshuler,D., Williams,A.L., Marquez-Luna,C., Huerta-Chagoya,A., Ripke,S., Gomez-Vazquez,M.J., Manning,A.K., Moreno-Macias,H., Garcia-Ortiz,H., Neale,B., Burtt,N.P., Aguilar-Salinas,C.A., Reich,D., Stram,D.O., Fernandez-Lopez,J.C., Romero-Hidalgo,S., Altshuler,D., Florez,J.C., Tusie-Luna,T., Patterson,N., Haiman,C.A., Aguilar-Delfin,I., Martinez-Hernandez,A., Centeno-Cruz,F., Mendoza-Caamal,E., Revilla-Monsalve,C., Islas-Andrade,S., Cordova,E., Rodriguez-Arellano,E., Soberon,X., Orozco,L., Florez,J.C., Gonzalez-Villalpando,C., Gonzalez-Villalpando,M.E., Haiman,C.A., Henderson,B.E., Monroe,K., Wilkens,L., Kolonel,L.N., Le Marchand,L., Riba,L., Ordonez-Sanchez,M.L., Rodriguez-Guillen,R., Cruz-Bautista,I., Rodriguez-Torres,M., Munoz-Hernandez,L.L., Saenz,T., Gomez,D., Alvirde,U., Burtt,N.P., Onofrio,R.C., Brodeur,W.M., Gage,D., Murphy,J., Franklin,J., Mahan,S., Ardlie,K., Crenshaw,A.T., Winckler,W., Prufer,K., Shunkov,M.V., Sawyer,S., Stenzel,U., Kelso,J., Lek,M., Sankararaman,S., Williams,A.L., Patterson,N., Macarthur,D.G., Reich,D., Derevianko,A.P., Paabo,S., Jacobs,S.B., Churchhouse,C., Gopal,S., Grammatikos,J.A., Smith,I.C., Bullock,K.H., Deik,A.A., Souza,A.L., Pierce,K.A., Clish,C.B., Altshuler,D., Fennell,T., Farjoun,Y., Genomics,Platform B., Gabriel,S., Stram,D.O., Gross,M.D., Pereira,M.A., Seielstad,M., Koh,W.P., Tai,E.S., Flannick,J., Fontanillas,P., Morris,A., Teslovich,T.M., Burtt,N.P., Atzmon,G., Blangero,J., Bowden,D.W., Chambers,J., Shin,Cho Y., Duggirala,R., Glaser,B., Hanis,C., Kooner,J., Laakso,M., Lee,J.Y., Tai,E.S., Ying,Teo Y., Wilson,J.G., Haiman,C.A., Henderson,B.E., Monroe,K., Wilkens,L., Kolonel,L.N., Le Marchand,L., Puppala,S., Farook,V.S., Thameem,F., Abboud,H.E., Defronzo,R.A., Jenkinson,C.P., Lehman,D.M., Curran,J.E., Blangero,J., Duggirala,R., Burtt,N.P., Cortes,M.L., Altshuler,D., Florez,J.C., Haiman,C.A., Henderson,B.E., Aguilar-Salinas,C.A., Gonzalez-Villalpando,C., Orozco,L., Tusie-Luna,T. (2014). Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature, 506 (7486), 97-101. *
Open Access Artículo
80 - Tsai,I.J., Zarowiecki,M., Holroyd,N., Garciarrubio,A., Sanchez-Flores,A., Brooks,K.L., Tracey,A., Bobes,R.J., Fragoso,G., Sciutto,E., Aslett,M., Beasley,H., Bennett,H.M., Cai,Jianping, Camicia,F., Clark,R., Cucher,M., De Silva,N., Day,T.A., Deplazes,P., Estrada,K., Fernandez,C., Holland,P.W.H., Hou,Junling, Hu,Songnian, Huckvale,Thomas, Hung,S.S., Kamenetzky,L., Keane,J.A., Kiss,F., Koziol,U., Lambert,O., Liu,K., Luo,Xuenong, Luo,Yingfeng, Macchiaroli,N., Nichol,S., Paps,Jordi, Parkinson,J., Pouchkina-Stantcheva,N., Riddiford,N., Rosenzvit,M., Salinas,G., Wasmuth,James D., Zamanian,M., Zheng,Yadong, Cai,Xuepeng, Soberon,X., Olson,P.D., Laclette,J.P., Brehm,Klaus, Berriman,M., Ochoa-Leyva,A. (2013). The genomes of four tapeworm species reveal adaptations to parasitism. Nature, 496 (7443), 57-63.
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Artículo
Artículo; Actas Paper
90 - Aguilar-Diaz,H., Bobes,R.J., Carrero,J.C., Camacho-Carranza,R., Cervantes,C., Cevallos,M.A., Davila,G., Rodriguez-Dorantes,M., Escobedo,G., Fernandez,J.L., Fragoso,G., Gaytan,P., Garciarrubio,A., Gonzalez,V.M., Gonzalez,L., Jose,M.V., Jimenez,L., Laclette,J.P., Landa,A., Larralde,C., Morales-Montor,J., Morett,E., Ostoa-Saloma,P., Sciutto,E., Santamaria,R.I., Soberon,X., de la Torre P., Valdes,V., Yanez,J. (2006). The genome project of Taenia solium. Parasitology International, 55 (Suppl), S127-S130.
Open Access Artículo
93 - Souza,V., Espinosa-Asuar,L., Escalante,A.E., Eguiarte,L.E., Farmer,J., Forney,L., Lloret,L., Rodriguez-Martinez,J.M., Soberon,X., Dirzo,R., Elser,J.J. (2006). An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert. Proceedings of the National Academy of Sciences of the United States of America, 103 (17), 6565-6570.
Artículo
94 - Gaytan,P., Yanez,J., Grande,R., Morett,E., Soberon,X. (2005). Improving random mutagenesis by purification of the oligonucleotide variants. Combinatorial Chemistry & High Throughput Screening, 8 (6), 537-544.
Open Access Artículo
99 - Osuna,J., Yanez,J., Soberon,X., Gaytan,P. (2004). Protein evolution by codon-based random deletions. Nucleic Acids Research, 32 (17), e136.
Open Access Artículo
101 - Yanez,J., Arguello,M., Osuna,J., Soberon,X., Gaytan,P. (2004). Combinatorial codon-based amino acid substitutions. Nucleic Acids Research, 32 (20), e158.
Artículo
110 - Galindo,E., Lagunas,F., Osuna,J., Soberon,X., Garcia,J.L. (1998). A microbial biosensor for 6-aminopenicillanic acid. Enzyme and Microbial Technology, 23 (5), 331-334.
Artículo
111 - Garcia,J.L., Nunez,C.J., Gonzalez,E.G., Osuna,J., Soberon,X., Galindo,E. (1998). Microbial sensor for new-generation cephalosporins based in a protein-engineered beta-lactamase. Applied Biochemistry and Biotechnology, 73 (2-3), 243-256.
Open Access Artículo
Artículo
117 - Muir,R.S., Flores,H., Zinder,N.D., Model,P., Soberon,X., Heitman,J. (1997). Temperature-sensitive mutants of the EcoRI endonuclease. Journal of Molecular Biology, 274 (5), 722-737.
Artículo
Artículo
Open Access Artículo
125 - Del Rio,G., Osuna,J., Soberon,X. (1994). Combinatorial libraries of proteins: analysis of efficiency of mutagenesis techniques. Biotechniques, 17 (6), 1132-1139.
Revisión
127 - Osuna,J., Flores,H., Soberon,X. (1994). Microbial systems and directed evolution of protein activities. Critical Reviews in Microbiology, 20 (2), 107-116.
Open Access Artículo
128 - Merino,E., Osuna,J., Bolivar,F., Soberon,X. (1992). A general, PCR-based method for single or combinatorial oligonucleotide-directed mutagenesis on pUC/M13 vectors. Biotechniques, 12 (4), 508-510.
Open Access Note
132 - Fuchs,L.Y., Ovando,C., Joseph,P., Soberon,X., Charli,J.L. (1990). Repetitive DNA sequence from the crayfish Procambarus clarkii. Nucleic Acids Research, 18 (6), 1650.
Artículo
133 - Pastor,N., Pinero,D., Valdes,A.M., Soberon,X. (1990). Molecular evolution of class A beta-lactamases: phylogeny and patterns of sequence conservation. Molecular Microbiology, 4 (11), 1957-1965.
Open Access Artículo
136 - Rossi,J.J., Soberon,X., Marumoto,Y., McMahon,J., Itakura,K. (1983). Biological expression of an Escherichia coli consensus sequence promoter and some mutant derivatives. Proceedings of the National Academy of Sciences of the United States of America, 80 (11), 3203-3207. *
Open Access Artículo
137 - Inouye,S., Soberon,X., Franceschini,T., Nakamura,K., Itakura,K., Inouye,M. (1982). Role of positive charge on the amino-terminal region of the signal peptide in protein secretion across the membrane. Proceedings of the National Academy of Sciences of the United States of America, 79 (11), 3438-3441. *
Artículo
Open Access Artículo
139 - Zarucki-Schulz,T., Tsai,S.Y., Itakura,K., Soberon,X., Wallace,R.B., Tsai,M.J., Woo,S.L., O'Malley,B.W. (1982). Point mutagenesis of the ovalbumin gene promoter sequence and its effect on in vitro transcription. Journal of Biological Chemistry, 257 (18), 11070-11077. *
Nacional
142 - Soberon,X. (2012). La medicina genómica en México, consideraciones para su desarrollo. Fortalezas y desafíos de los servicios de salud de México en el siglo XXI. 202-205.
Internacional
143 - Frausto-Solis,J., Soberon-Mainero,X., Linan-Garcia,E. (2009). MultiQuenching annealing algorithm for protein folding problem. Mexican International Conference on Artificial Intelligence. MICAI 2009: Advances in Artificial Intelligence. Lecture Notes in Computer Science, 578-589.
Nacional
144 - Segovia,L., Soberon,X. (2008). Evolución experimental de proteínas. Una ventana al quehacer científico. Instituto de Biotecnología de la UNAM 25 aniversario, cap 26. 291-302, Mexico, D.F..
Internacional
145 - Barona-Gomez,F., Ochoa-Leyva,A., Soberon,X. (2007). Advances and perspectives in protein engineering: from natural history to directed evolution of enzymes. Advances in Protein Physical Chemistry. 407-438, Kerala: Research Signpost.
Memoria in extenso
146 - Frausto-Solis,J., Roman,E.F., Romero,D., Soberon,X., Linan-Garcia,E. (2007). Analytically tuned simulated annealing applied to the protein folding problem. Lecture Notes in Computer Science vol 4488. 370-377.
Nacional
147 - Soberon,X., Montero,G.M. (2004). Ingeniería de proteínas y evolución dirigida. Fundamentos y casos exitosos de la biotecnologia moderna cap 7. 195-217, Mexico.
Nacional
148 - Soberon,X. (2003). Biocatálisis y evolución dirigida de proteínas. Fronteras de la Biología en los Inicios del Siglo XXI, Módulo VII. 35-45, Mexico,D.F..
Nacional
149 - Soberon,X. (2003). Las proteínas. Biología Celular y Molecular. 43-62, Mexico,D.F.: Pearson.
Memoria in extenso
150 - Saab-Rincon,G., Del Rio,G, Santamaria,R, Diaz,M.L, Soberon,X., Lopez-Munguia,A. (2002). Novel and potential applications of alpha-amylases in the food industry. Engineering and Food for the 21st Century. Proceedings of the Eighth International Congress on Engineering and Food. 913-924, Boca Raton, Fla.
Nacional
151 - Soberon,X., Bolivar,F. (2001). Evolución de los conceptos de gen y genoma. Ciencias de la vida. 61-83.
Nacional
152 - Soberon,X., Bolivar,F. (1999). Gen y genoma. Ciencias de la Vida: Reestructuracon de conceptos. Aprender a aprender., 9-29, Mexico DF.
Internacional
153 - Balbas,P., Soberon,X., Bolivar,F., Rodriguez,R.L. (1988). The plasmid, pBR322. Biotechnology (Reading, Mass.). 5-41, 10.
Divulgación
154 - Soberon, X., Bergna, M., Valez, M. A. (2018). Iguales o difererentes? Genómica. 64 pp, Ciudad de Mexico: Ediciones Tecolote.
Nacional
155 - Bolivar-Zapata, F.G., Arias-Ortiz, C. F., Artega-Vazquez, M. A., Barrera-Saldana, H. A., Galindo-Fentanes, E., Gracia-Gasca, A., Herrera-Estrella, L. R., Higuera-Ciapara, I., Larque-Saavedra, F. A., Lopez-Munguia Canales, A., Ramirez-Reivich, O. T., Revah-Moiseev, S., Soberon-Mainero, X., Torres-Pacheco, I., Uribe de la Mora, J. M., Vazquez-Ramos, J. M., Viniegra-Gonzalez, G. (2017). Transgénicos: Grandes beneficios, ausencia de daños y mitos. Mexico.
Nacional
156 - Bolivar-Zapata,F.G., Arias-Ortiz,C.F., Arriaga-Arellano,E., Barrera-Saldaña,H., de la Torres-Martinez,M., Espinosa-Fernandez,J., Galindo-Fentanes,E., Galvez-Mariscal,A, Gracia-Gasca,A., Herrera-Estrella,L., Larque-Saavedra,A., Lopez-Munguia Canales,A., Noyola-Robles,A., Paredes-Lopez,O., Ramirez-Reivich,O.T., Revah-Moiseev,S., Soberon-Mainero,J., Soberon-Mainero,X., Torres-Pacheco,I., Uribe de la Mora,J., Viniegra-Gonzalez,G. (2011). Por un uso responsable de los organismos genéticamente modificados. Mexico.
Preprint
157 - Oropeza-Valdez,J.J., Padron-Manrique,C., Vazquez-Jimenez,A., Soberon,X., Resendis-Antonio,O. (2024). Exploring Metabolic Anomalies in COVID-19 and Post-COVID-19: A Machine Learning Approach with Explainable Artificial Intelligence. bioRxiv, Preprint posted April 17, 2024.
Open Access Nacional divulgacion
158 - Soberon-Mainero,X. (2023). La Ingeniería Genética: una muy poderosa técnica, definidora de una carrera científica. Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM, 35.
Editorial Material, Meeting Report
159 - Cornejo-Granados,F., Calderon de la Barca,A.M., Torres,N., Martinez-Romero,E., Torres,J., Lopez-Vidal,Y., Soberon,X., Partida-Martinez,L.P., Pinto-Cardoso,S., Alcaraz,L.D., Pardo-Lopez,L., Canizales-Quinteros,S., Puente,J.L., Ochoa-Leyva,A. (2019). Microbiome-MX 2018: Microbiota and Microbiome opportunities in Mexico, a megadiverse country. Research in Microbiology, 170 (4-5), 235-241.
Open Access Divulgación
160 - Soberon-Mainero,X., Gonzalez-Covarrubias,V. (2014). Enfermedades infecciosas, hacia una medicina personalizada. Revista Digital Universitaria, 15 (6), art 43. *
Open Access Editorial Material
161 - Soberon-Mainero,X., Melendez-Zajgla,J. (2010). [The Instituto Nacional de Medicina Genomica. Vocation and challenges]. Revista de Investigacion Clinica, 62 (5), 391-392. *
Open Access Nacional
Open Access Divulgación
164 - Soberon Mainero,X (2003). Veinte años del Instituto de Biotecnología. Revista Universidad de Mexico, 629.
Open Access Divulgación
165 - Soberon Mainero, X. (2002). La revolución de las ciencias genómicas. Revista Universidad Nacional, 617.
Open Access Divulgación
169 - Soberon,X. (2000). El convenio UNAM-INE-Diversa y el aprovechamiento de recursos geneticos. BioTecnologia. Sociedad Mexicana de Biotecnologia y Bioingenieria, 5, 14-15.
Open Access Divulgación
170 - Soberon,X. (2000). Imitar la naturaleza?. ¿Como ves?, 18, 30-33.
News Item
171 - Soberon,X. (1999). Enzymes directly evolving toward commercial applications. Nature Biotechnology, 17 (6), 539-540.
Nacional
172 - Oliver,G., Balbas,P., Valle,F., Soberon,X., Bolivar,F. (1985). [Cloning of human leukocyte interferon cDNA and a strategy for its production in E. coli]. Revista Latinoamericana de Microbiologia, 27 (2), 141-150.
173 - Soberon Mainero, Francisco Xavier (1982). Uso de vehiculos moleculares de clonacion y de sintesis quimica de polinucleotidos para el estadio de la expresion genica. Instituto de Investigaciones Biomedicas, Maestria en Investigacion Biomedica Basica, UNAM. *
Asesor: Itakura, Keiichi, Bolivar Zapata, Francisco

Open Access Artículo
174 - Martinez-Flores,I., Bustos,P., Santamaria,R.I., Aguayo-Gonzalez,A., Silva-Herzog,E., Soberon,X., Gonzalez,V., Cabrera-Contreras,R.. Comparative genomics of methicillin-resistant and -susceptible Staphylococcus aureus from Mexico City hospitals. Microbiology Spectrum, 14 (4), e0314025.
Artículo
175 - Oropeza-Valdez,J.J., Padron-Manrique,C., Arellano-Villavicencio,J.E., Vazquez-Jimenez,A., Hernandez-Juarez,L.E., Soberon,X., Reyes-Escogido,M.L., Guardado-Mendoza,R., Resendis-Antonio,O.. Digital modeling of metformin and diet interactions on gut-microbiota metabolism in prediabetic patients. Computational and Structural Biotechnology Journal, 31, 250-262.
Open Access Artículo
176 - Alvarado-Pena,N., Munoz-Torrico,M., Narvaez-Diaz,L., Mejia-Ponce,P.M, Becerril-Vargas,E., Zuniga,J., Muniz-Salazar,R., Laniado-Laborin,R., Licona-Cassani,C., Soberon,X., Silva-Herzog,E.. Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes. Frontiers in Microbiology, 16, 1666838.
Open Access Artículo
177 - Anwar,S., Lamaudiere,M., Hassall,J., Dehinsilu,J., Bhuller,R.K., Hold,G.L., Va­zquez-Campos,X., Mahnert,A., Moissl-Eichinger,C., Galle,B., Kainz,G., Pjevac,P., Hausmann,B., Schwarz,J., Kohl,G., Berry,D., Vancuren,S.J., len-Vercoe,E., Nielsen,N., Sorensen,N., Eklund,A., Nielsen,H.B., Riedel,R., Krause,J.L., Chang,H.-D., Park,S., Song,H.-Y., Seo,H., Ul-Haq,A., Kim,S., Kwon,Y., Park,S., Soberon,X., Silva-Herzog,E., Verlouw,J.A.M., Arp,P., Jhamai,M., Kraaij,R., Geelen,A.R., Ducarmon,Q.R., Smits,W.K., Kuijper,E.J., Zwittink,R.D., van,Best N., Penders,J., Le,G., Driessen,C., Kool,J., Shetty,S.A., Fuentes,S., Demirci,M., Yigin,A., Whalley,C., Beggs,A.D., Quince,C., James,R., Raguideau,S., Gordon,M., Mate,R., Fritzsche,M., Danckert,N.P., Blanco,J.M., Marchesi,J.R., Rauch,M., Williamson,R.A., Van't Wout,A.B., Kritz,A., Rosecker,S., Stevens,R., Laws,L., Sayavedra,L., Romano,S., Telatin,A., Baker,D., Narbad,A., Servetas,S.L., Kralj,J.G., Forry,S.P., Hunter,M.E., Dootz,J.N., Jackson,S.A., Mason,C.E., Butler,D.J., Mozsary,C., Foox,J., Damle,N., Resh,A., Busswitz,A., Lenz,P., Sontag,S., Cross,A., Sanchez,C., Guo,M., Olson,K., Smith,E.A., La Reau,A.J., Ward,T., Kuersten,S., Hyde,F., Khrebtukova,I., Schroth,G., Rijpkema,S., Amos,G.C.A., Sergaki,C.. DNA reference reagents isolate biases in microbiome profiling: a global multi-lab study. mSystems, 10 (11), e00466-25.
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Artículo
Open Access Artículo
180 - Galeana-Cadena,D., Ramirez-Martinez,G., Choreno-Parra,J.A., Silva-Herzog,E., Hernandez-Cardenas,C.M., Soberon,X., Zuniga,J.. Microbiome in the Nasopharynx: Insights into the Impact of COVID-19 Severity. Heliyon, 10 (10), e31562.
Open Access Artículo
181 - Oropeza-Valdez,J.J., Padron-Manrique,C., Vazquez-Jimenez,A., Soberon,X., Resendis-Antonio,O.. Exploring metabolic anomalies in COVID-19 and post-COVID-19: a machine learning approach with explainable artificial intelligence. Frontiers in Molecular Biosciences, 11, 1429281.
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183 - Oropeza-Valdez,J.J., Padron-Manrique,C., Vazquez-Jimenez,A., Soberon,X., Resendis-Antonio,O.. Exploring Metabolic Anomalies in COVID-19 and Post-COVID-19: A Machine Learning Approach with Explainable Artificial Intelligence. bioRxiv, Preprint posted April 17, 2024.
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184 - Alvarado-Pena,N., Galeana-Cadena,D., Gomez-Garcia,I.A, Soberon-Mainero,X, Silva-Herzog,E. The microbiome and the gut-lung axis in tuberculosis: interplay in the course of disease and treatment. Frontiers in Microbiology, 14, 1237998.
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185 - Soberon-Mainero,X.. La Ingeniería Genética: una muy poderosa técnica, definidora de una carrera científica. Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM, 35.
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186 - Barbosa-Amezcua,M., Cuevas-Cordoba,B., Fresno,C., Haase-Hernandez,J.I., Carrillo-Sanchez,K., Mata-Rocha,M., Munoz-Torrico,M., Backer,C., Gonzalez-Covarrubias,V., Alaez-Verson,C., Soberon,X.. Rapid Identification of Drug Resistance and Phylogeny in M. tuberculosis, Directly from Sputum Samples. Microbiology Spectrum, 10 (5), e0125222.
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187 - Martinez-Magana,J.J., Genis-Mendoza,A.D., Gonzalez-Covarrubias,V., Juarez-Rojop,I.E., Tovilla-Zarate,C.A., Soberon,X., Lanzagorta,N., Nicolini,H.. Association of FAAH p.Pro129Thr and COMT p.Ala72Ser with schizophrenia and comorbid substance use through next-generation sequencing: an exploratory analysis. Brazilian Journal of Psychiatry, 44 (2), 164-170. *
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189 - Cuevas-Cordoba,B., Fresno,C., Haase-Hernandez,J.I., Barbosa-Amezcua,M., Mata-Rocha,M., Munoz-Torrico,M., Salazar-Lezama,M.A., Martinez-Orozco,J.A., Narvaez-Diaz,L.A., Salas-Hernandez,J., Gonzalez-Covarrubias,V., Soberon,X.. A bioinformatics pipeline for Mycobacterium tuberculosis sequencing that cleans contaminant reads from sputum samples. PLoS ONE, 16 (10), e0258774. *
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190 - Gonzalez-Covarrubias,V,, Sanchez-Ibarra,H., Lozano-Gonzalez, K., Villicana, S., Texis,T., Rodriguez-Dorantes,M., Cortes-Ramirez,S., Lavalle-Gonzalez,F,, Soberon,X., Barrera-Saldana,H.. Transporters, TBC1D4, and ARID5B Variants to Explain Glycated Hemoglobin Variability in Patients with Type 2 Diabetes. Pharmacology, 106 (11-12), 588-596.
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192 - Valdez-Palomares,F., Munoz-Torrico,M., Palacios-Gonzalez,B., Soberon,X., Silva-Herzog,E.. Altered Microbial Composition of Drug-Sensitive and Drug-Resistant TB Patients Compared with Healthy Volunteers. Microorganisms, 9 (8), 1762.
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193 - Gonzalez-Covarrubias,V., Lozano,K., Texis,T., Guzman-Cruz,C.K., Rodriguez-Dorantes,M., Rubio-Carrasco,K., Mendez-Lorenzo,L.H., Soberon,X.. Pharmacogenomics: Current Actionable Variants. Revista de Investigacion Clinica, 73 (3). *
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194 - Cabrera-Contreras,R., Santamaria,R.I., Bustos,P., Martinez-Flores,I., Melendez-Herrada,E., Morelos-Ramirez,R., Barbosa-Amezcua,M., Gonzalez-Covarrubias,V., Silva-Herzog,E., Soberon,X., Gonzalez,V.. Genomic diversity of prevalent Staphylococcus epidermidis multidrug-resistant strains isolated from a Children's Hospital in Mexico City in an eight-years survey. PeerJ, 7, e8068. *
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195 - Flannick,J., Mercader,J.M., Fuchsberger,C., Udler,M.S., Mahajan,A., Wessel,J., Teslovich,T.M., Caulkins,L., Koesterer,R., Barajas-Olmos,F., Blackwell,T.W., Boerwinkle,E., Brody,J.A., Centeno-Cruz,F., Chen,L., Chen,S., Contreras-Cubas,C., Cordova,E., Correa,A., Cortes,M., Defronzo,R.A., Dolan,L., Drews,K.L., Elliott,A., Floyd,J.S., Gabriel,S., Garay-Sevilla,M.E., Garcia-Ortiz,H., Gross,M., Han,S., Heard-Costa,N.L., Jackson,A.U., Jorgensen,M.E., Kang,H.M., Kelsey,M., Kim,B.J., Koistinen,H.A., Kuusisto,J., Leader,J.B., Linneberg,A., Liu,C.T., Liu,J., Lyssenko,V., Manning,A.K., Marcketta,A., Malacara-Hernandez,J.M., Martinez-Hernandez,A., Matsuo,K., Mayer-Davis,E., Mendoza-Caamal,E., Mohlke,K.L., Morrison,A.C., Ndungu,A., Ng,M.C.Y., O'Dushlaine,C., Payne,A.J., Pihoker,C., Post,W.S., Preuss,M., Psaty,B.M., Vasan,R.S., Rayner,N.W., Reiner,A.P., Revilla-Monsalve,C., Robertson,N.R., Santoro,N., Schurmann,C., So,W.Y., Soberon,X., Stringham,H.M., Strom,T.M., Tam,C.H.T., Thameem,F., Tomlinson,B., Torres,J.M., Tracy,R.P., van Dam,R.M., Vujkovic,M., Wang,S., Welch,R.P., Witte,D.R., Wong,T.Y., Atzmon,G., Barzilai,N., Blangero,J., Bonnycastle,L.L., Bowden,D.W., Chambers,J.C., Chan,E., Cheng,C.Y., Cho,Y.S., Collins,F.S., de Vries,P.S., Duggirala,R., Glaser,B., Gonzalez,C., Gonzalez,M.E., Groop,L., Kooner,J.S., Kwak,S.H., Laakso,M., Lehman,D.M., Nilsson,P., Spector,T.D., Tai,E.S., Tuomi,T., Tuomilehto,J., Wilson,J.G., Aguilar-Salinas,C.A., Bottinger,E., Burke,B., Carey,D.J., Chan,J.C.N., Dupuis,J., Frossard,P., Heckbert,S.R., Hwang,M.Y., Kim,Y.J., Kirchner,H.L., Lee,J.Y., Lee,J., Loos,R.J.F., Ma,R.C.W., Morris,A.D., O'Donnell,C.J., Palmer,C.N.A., Pankow,J., Park,K.S., Rasheed,A., Saleheen,D., Sim,X., Small,K.S., Teo,Y.Y., Haiman,C., Hanis,C.L., Henderson,B.E., Orozco,L., Tusie-Luna,T., Dewey,F.E., Baras,A., Gieger,C., Meitinger,T., Strauch,K., Lange,L., Grarup,N., Hansen,T., Pedersen,O., Zeitler,P., Dabelea,D., Abecasis,G., Bell,G.I., Cox,N.J., Seielstad,M., Sladek,R., Meigs,J.B., Rich,S.S., Rotter,J.I., Altshuler,D., Burtt,N.P., Scott,L.J., Morris,A.P., Florez,J.C., McCarthy,M.I., Boehnke,M.. Exome sequencing of 20,791 cases of type 2 diabetes and 24,440 controls. Nature, 570 (7759), 71-76. *
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196 - Gonzalez-Covarrubias,V., Morales-Franco,M., Cruz-Correa,O.F., Martinez-Hernandez,A., Garcia-Ortiz,H., Barajas-Olmos,F., Genis-Mendoza,A.D., Martinez-Magana,J.J., Nicolini,H., Orozco,L., Soberon,X.. Variation in Actionable Pharmacogenetic Markers in Natives and Mestizos From Mexico. Frontiers in Pharmacology, 10, 1169. *
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197 - Madrazo-Moya,C.F., Cancino-Munoz,I., Cuevas-Cordoba,B., Gonzalez-Covarrubias,V., Barbosa-Amezcua,M., Soberon,X., Muniz-Salazar,R., Martinez-Guarneros,A., Backer,C., Zarrabal-Meza,J., Sampieri-Ramirez,C., Enciso-Moreno,A., Lauzardo,M., Comas,I., Zenteno-Cuevas,R.. Whole genomic sequencing as a tool for diagnosis of drug and multidrug-resistance tuberculosis in an endemic region in Mexico. PLoS ONE, 14 (6), e0213046. *
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198 - Martinez-Magana,J.J., Genis-Mendoza,A.D., Gonzalez-Covarrubias,V., Jimenez-Guenchi,J., Galindo-Chavez,A.G., Roche-Bergua,A., Castaneda-Gonzalez,C., Lanzagorta,N., Soberon,X., Nicolini,H.. Exploratory analysis of rare and novel variants in Mexican patients diagnosed with schizophrenia and dementia. Revista de Investigacion Clinica, 71 (4), 246-254. *
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199 - Cornejo-Granados,F., Calderon de la Barca,A.M., Torres,N., Martinez-Romero,E., Torres,J., Lopez-Vidal,Y., Soberon,X., Partida-Martinez,L.P., Pinto-Cardoso,S., Alcaraz,L.D., Pardo-Lopez,L., Canizales-Quinteros,S., Puente,J.L., Ochoa-Leyva,A.. Microbiome-MX 2018: Microbiota and Microbiome opportunities in Mexico, a megadiverse country. Research in Microbiology, 170 (4-5), 235-241.
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200 - Ayon-Nunez, D.A., Fragoso, G., Espitia, C., Garcia-Varela, M., Soberon, X., Rosas, G., Laclette, J.P., Bobes, R.J.. Identification and characterization of Taenia solium enolase as a plasminogen-binding protein. Acta Tropica, 182, 69-79. *
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201 - Flores-Bautista, J., Navarrete-Perea, J., Fragoso, G., Flisser, A., Soberon, X., Laclette, J.P.. Fate of uptaken host proteins in Taenia solium and Taenia crassiceps cysticerci. Bioscience Reports, 38 (4), BSR20180636. *
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202 - Soberon, X., Bergna, M., Valez, M. A.. Iguales o difererentes? Genómica. 64 pp, Ciudad de Mexico: Ediciones Tecolote.
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203 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A.. A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data. PeerJ, 5, e4133.
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204 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E.. Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen. Infection and Immunity, 85, e00395-17.
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205 - Cruz-Correa, O.F., Leon-Cachon, R.B., Barrera-Saldana, H.A., Soberon, X.. Prediction of atorvastatin plasmatic concentrations in healthy volunteers using integrated pharmacogenetics sequencing. Pharmacogenomics, 18 (2), 121-131.
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206 - Gonzalez-Covarrubias, V., Urena-Carrion, J., Villegas-Torres, B., Cossio-Aranda, J.E., Trevethan-Cravioto, S., Izaguirre-Avila, R., Fiscal-Lopez, O.J., Soberon, X.. Pharmacogenetic Variation in Over 100 Genes in Patients Receiving Acenocumarol. Frontiers in Pharmacology, 8, 863. *
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207 - Marquez-Luna,C., Loh,P.R., Price,A.L., South Asian Type 2 Diabet SAT2D, SIGMA Type 2 Diabet Consortium, Soberon,X.. Multiethnic polygenic risk scores improve risk prediction in diverse populations. Genetic Epidemiology, 41 (8), 811-823. *
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208 - Mercader, J.M., Liao, R.G., Davis, A., Dymek, Z., Estrada, K., Tukiainen, T., Huerta-Chagoya, A., Moreno-Macias, H., Jablonski, K.A., Hanson, R.L., Walford, G.A., Moran, I., Chen, L., Agarwala, V., Ordonez-Sanchez, M.L., Rodriguez-Guillen, R., Rodriguez-Torres, M., Segura-Kato, Y., Garcia-Ortiz, H., Centeno-Cruz, F., Barajas-Olmos, F., Caulkins, L., Puppala, S., Fontanillas, P., Williams, A., Bonas-Guarch, S., Hartl, C., Ripke, S., Tooley, K., Lane, J., Zerrweck, C., Martinez-Hernandez, A., Cordova, E.J., Mendoza-Caamal, E., Contreras-Cubas, C., Gonzalez-Villalpando, M.E., Cruz-Bautista, I., Munoz-Hernandez, L., Gomez-Velasco, D., Alvirde, U., Henderson, B.E., Wilkens, L.R., Le, Marchand L., Arellano-Campos, O., Riba, L., Harden, M., Platform, B.G., Gabriel, S., Abboud, H.E., Cortes, M.L., Revilla-Monsalve, C., Islas-Andrade, S., Soberon, X., Curran, J.E., Jenkinson, C.P., Defronzo, R.A., Lehman, D.M., Hanis, C.L., Bell, G.I., Boehnke, M., Blangero, J., Duggirala, R., Saxena, R., MacArthur, D., Ferrer, J., McCarroll, S.A., Torrents, D., Knowler, W.C., Baier, L.J., Burtt, N., Gonzalez-Villalpando, C., Haiman, C.A., Aguilar-Salinas, C.A., Tusie-Luna, T., Flannick, J., Jacobs, S.B.R., Orozco, L., Altshuler, D., Florez, J.C.. A Loss-Of-Function Splice Acceptor Variant in IGF2 is Protective for Type 2 Diabetes. Diabetes, 66 (11), 2903-2914. *
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209 - Navarrete-Perea, J., Isasa, M., Paulo, J.A., Corral-Corral, R., Flores-Bautista, J., Hernandez-Tellez, B., Bobes, R.J., Fragoso, G., Sciutto, E., Soberon, X., Gygi, S.P., Laclette, J.P.. Quantitative multiplexed proteomics of Taenia solium cysts obtained from the skeletal muscle and central nervous system of pigs. PLoS Neglected Tropical Diseases, 11 (9), e0005962.
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210 - Navarrete-Perea, J., Moguel, B.A., Bobes, R.J., Villalobos, N., Carrero, J.C., Sciutto, E., Soberon, X., Laclette, J.P.. Protein profiles of Taenia solium cysts obtained from skeletal muscles and the central nervous system of pigs: Search for tissue-specific proteins. Experimental Parasitology, 172, 23-29.
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211 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X.. Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
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212 - Rusu,V., Hoch,E., Mercader,J.M., Tenen,D.E., Gymrek,M., Hartigan,C.R., Deran,M., von Grotthuss,M., Fontanillas,P., Spooner,A., Guzman,G., Deik,A.A., Pierce,K.A., Dennis,C., Clish,C.B., Carr,S.A., Wagner,B.K., Schenone,M., Ng,M.C.Y., Chen,B.H., Centeno-Cruz,F., Zerrweck,C., Orozco,L., Altshuler,D.M., Schreiber,S.L., Florez,J.C., Jacobs,S.B.R., Lander,E.S., MEDIA Consortium, SIGMA T2D Consortium, Soberon,X.. Type 2 Diabetes Variants Disrupt Function of SLC16A11 through Two Distinct Mechanisms. Cell, 170 (1), 199-+. *
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213 - Bolivar-Zapata, F.G., Arias-Ortiz, C. F., Artega-Vazquez, M. A., Barrera-Saldana, H. A., Galindo-Fentanes, E., Gracia-Gasca, A., Herrera-Estrella, L. R., Higuera-Ciapara, I., Larque-Saavedra, F. A., Lopez-Munguia Canales, A., Ramirez-Reivich, O. T., Revah-Moiseev, S., Soberon-Mainero, X., Torres-Pacheco, I., Uribe de la Mora, J. M., Vazquez-Ramos, J. M., Viniegra-Gonzalez, G.. Transgénicos: Grandes beneficios, ausencia de daños y mitos. Mexico.
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215 - Gonzalez-Covarrubias,V., Martinez-Magana,J.J., Coronado-Sosa,R., Villegas-Torres,B., Genis-Mendoza,A.D., Canales-Herrerias,P., Nicolini,H., Soberon,X.. Exploring Variation in Known Pharmacogenetic Variants and its Association with Drug Response in Different Mexican Populations. Pharmaceutical Research, 33 (11), 2644-2652. *
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216 - Lek,M., Karczewski,K.J., Minikel,E.V., Samocha,K.E., Banks,E., Fennell,T., O'Donnell-Luria,A.H., Ware,J.S., Hill,A.J., Cummings,B.B., Tukiainen,T., Birnbaum,D.P., Kosmicki,J.A., Duncan,L.E., Estrada,K., Zhao,F.M., Zou,J., Pierce-Hollman,E., Berghout,J., Cooper,D.N., Deflaux,N., DePristo,M., Do,R., Flannick,J., Fromer,M., Gauthier,L., Goldstein,J., Gupta,N., Howrigan,D., Kiezun,A., Kurki,M.I., Moonshine,A.L., Natarajan,P., Orozeo,L., Peloso,G.M., Poplin,R., Rivas,M.A., Ruano-Rubio,V., Rose,S.A., Ruderfer,D.M., Shakir,K., Stenson,P.D., Stevens,C., Thomas,B.P., Tiao,G., Tusie-Luna,M.T., Weisburd,B., Won,H.H., Yu,D.M., Altshuler,D.M., Ardissino,D., Boehnke,M., Danesh,J., Donnelly,S., Elosua,R., Florez,J.C., Gabriel,S.B., Getz,G., Glatt,S.J., Hultman,C.M., Kathiresan,S., Laakso,M., NcCarroll,S., McCarthy,M.I., McGovern,D., McPherson,R., Neale,B.M., Palotie,A., Purcell,S.M., Saleheen,D., Scharf,J.M., Sklar,P., Sullivan,P.F., Tuomilehto,J., Tsuang,M.T., Watkins,H.C., Wilson,J.G., Daly,M.J., Macarthur,D.G., Exome Aggregation Consortium, Soberon,X.. Analysis of protein-coding genetic variation in 60,706 humans. Nature, 536 (7616), 285-+. *
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217 - Navarrete-Perea,J., Toledano-Magana,Y., Torre,P., Sciutto,E., Bobes,R.J., Soberon,X., Laclette,J.P.. Role of porcine serum haptoglobin in the host-parasite relationship of Taenia solium cysticercosis. Molecular and Biochemical Parasitology, 207 (2), 61-67.
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219 - Gomez,S., Adalid-Peralta,L., Palafox-Fonseca,H., Cantu-Robles,V.A., Soberon,X., Sciutto,E., Fragoso,G., Bobes,R.J., Laclette,J.P., Yauner,L.D., Ochoa-Leyva,A.. Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR). Scientific Reports, 5, 9683 [erratum en vol 5 (12385) ].
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220 - Villegas-Torres,B., Sanchez-Giron,F., Jaramillo-Villafuerte,K., Soberon,X., Gonzalez-Covarrubias,V.. Genotype frequencies of VKORC1 and CYP2C9 in Native and Mestizo populations from Mexico, potential impact for coumarin dosing. Gene, 558 (2), 235-240. *
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221 - Estrada,K., Aukrust,I., Bjorkhaug,L., Burtt,N.P., Mercader,J.M., Garcia-Ortiz,H., Huerta-Chagoya,A., Moreno-Macias,H., Walford,G., Flannick,J., Williams,A.L., Gomez-Vazquez,M.J., Fernandez-Lopez,J.C., Martinez-Hernandez,A., Centeno-Cruz,F., Mendoza-Caamal,E., Revilla-Monsalve,C., Islas-Andrade,S., Cordova,E.J., Soberon,X., Gonzalez-Villalpando,M.E., Henderson,E., Wilkens,L.R., Le Marchand,L., Arellano-Campos,O., Ordonez-Sanchez,M.L., Rodriguez-Torres,M., Rodriguez-Guillen,R., Riba,L., Najmi,L.A., Jacobs,S.B., Fennell,T., Gabriel,S., Fontanillas,P., Hanis,C.L., Lehman,D.M., Jenkinson,C.P., Abboud,H.E., Bell,G.I., Cortes,M.L., Boehnke,M., Gonzalez-Villalpando,C., Orozco,L., Haiman,C.A., Tusie-Luna,T., Aguilar-Salinas,C.A., Altshuler,D., Njolstad,P.R., Florez,J.C., Macarthur,D.G.. Association of a Low-Frequency Variant in HNF1A With Type 2 Diabetes in a Latino Population. JAMA, 311 (22), 2305-2314. *
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222 - Majithia,A.R., Flannick,J., Shahinian,P., Guo,M., Bray,M.A., Fontanillas,P., Gabriel,S.B., Rosen,E.D., Altshuler,D., SIGMA T2D Consortium, Soberon,X.. Rare variants in PPARG with decreased activity in adipocyte differentiation are associated with increased risk of type 2 diabetes. Proceedings of the National Academy of Sciences of the United States of America, 111 (36), 13127-13132. *
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223 - Moreno-Estrada,A., Gignoux,C.R., Fernandez-Lopez,J.C., Zakharia,F., Sikora,M., Contreras,A.V., Acuna-Alonzo,V., Sandoval,K., Eng,C., Romero-Hidalgo,S., Ortiz-Tello,P., Robles,V., Kenny,E.E., Nuno-Arana,I., Barquera-Lozano,R., Macin-Perez,G., Granados-Arriola,J., Huntsman,S., Galanter,J.M., Via,M., Ford,J.G., Chapela,R., Rodriguez-Cintron,W., Rodriguez-Santana,J.R., Romieu,I., Sienra-Monge,J.J., del Rio-Navarro,B., London,S.J., Ruiz-Linares,A., Garcia-Herrera,R., Estrada,K., Hidalgo-Miranda,A., Jimenez-Sanchez,G., Carnevale,A., Soberon,X., Canizales-Quinteros,S., Rangel-Villalobos,H., Silva-Zolezzi,I., Burchard,E.G., Bustamante,C.D.. The genetics of Mexico recapitulates Native American substructure and affects biomedical traits. Science, 344 (6189), 1280-1285. *
Artículo
224 - Williams,A.L., Jacobs,S.B., Moreno-Macias,H., Huerta-Chagoya,A., Churchhouse,C., Marquez-Luna,C., Garcia-Ortiz,H., Gomez-Vazquez,M.J., Burtt,N.P., Aguilar-Salinas,C.A., Gonzalez-Villalpando,C., Florez,J.C., Orozco,L., Haiman,C.A., Tusie-Luna,T., Altshuler,D., Williams,A.L., Marquez-Luna,C., Huerta-Chagoya,A., Ripke,S., Gomez-Vazquez,M.J., Manning,A.K., Moreno-Macias,H., Garcia-Ortiz,H., Neale,B., Burtt,N.P., Aguilar-Salinas,C.A., Reich,D., Stram,D.O., Fernandez-Lopez,J.C., Romero-Hidalgo,S., Altshuler,D., Florez,J.C., Tusie-Luna,T., Patterson,N., Haiman,C.A., Aguilar-Delfin,I., Martinez-Hernandez,A., Centeno-Cruz,F., Mendoza-Caamal,E., Revilla-Monsalve,C., Islas-Andrade,S., Cordova,E., Rodriguez-Arellano,E., Soberon,X., Orozco,L., Florez,J.C., Gonzalez-Villalpando,C., Gonzalez-Villalpando,M.E., Haiman,C.A., Henderson,B.E., Monroe,K., Wilkens,L., Kolonel,L.N., Le Marchand,L., Riba,L., Ordonez-Sanchez,M.L., Rodriguez-Guillen,R., Cruz-Bautista,I., Rodriguez-Torres,M., Munoz-Hernandez,L.L., Saenz,T., Gomez,D., Alvirde,U., Burtt,N.P., Onofrio,R.C., Brodeur,W.M., Gage,D., Murphy,J., Franklin,J., Mahan,S., Ardlie,K., Crenshaw,A.T., Winckler,W., Prufer,K., Shunkov,M.V., Sawyer,S., Stenzel,U., Kelso,J., Lek,M., Sankararaman,S., Williams,A.L., Patterson,N., Macarthur,D.G., Reich,D., Derevianko,A.P., Paabo,S., Jacobs,S.B., Churchhouse,C., Gopal,S., Grammatikos,J.A., Smith,I.C., Bullock,K.H., Deik,A.A., Souza,A.L., Pierce,K.A., Clish,C.B., Altshuler,D., Fennell,T., Farjoun,Y., Genomics,Platform B., Gabriel,S., Stram,D.O., Gross,M.D., Pereira,M.A., Seielstad,M., Koh,W.P., Tai,E.S., Flannick,J., Fontanillas,P., Morris,A., Teslovich,T.M., Burtt,N.P., Atzmon,G., Blangero,J., Bowden,D.W., Chambers,J., Shin,Cho Y., Duggirala,R., Glaser,B., Hanis,C., Kooner,J., Laakso,M., Lee,J.Y., Tai,E.S., Ying,Teo Y., Wilson,J.G., Haiman,C.A., Henderson,B.E., Monroe,K., Wilkens,L., Kolonel,L.N., Le Marchand,L., Puppala,S., Farook,V.S., Thameem,F., Abboud,H.E., Defronzo,R.A., Jenkinson,C.P., Lehman,D.M., Curran,J.E., Blangero,J., Duggirala,R., Burtt,N.P., Cortes,M.L., Altshuler,D., Florez,J.C., Haiman,C.A., Henderson,B.E., Aguilar-Salinas,C.A., Gonzalez-Villalpando,C., Orozco,L., Tusie-Luna,T.. Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature, 506 (7486), 97-101. *
Open Access Divulgación
225 - Soberon-Mainero,X., Gonzalez-Covarrubias,V.. Enfermedades infecciosas, hacia una medicina personalizada. Revista Digital Universitaria, 15 (6), art 43. *
Open Access Artículo
Open Access Artículo
227 - Tsai,I.J., Zarowiecki,M., Holroyd,N., Garciarrubio,A., Sanchez-Flores,A., Brooks,K.L., Tracey,A., Bobes,R.J., Fragoso,G., Sciutto,E., Aslett,M., Beasley,H., Bennett,H.M., Cai,Jianping, Camicia,F., Clark,R., Cucher,M., De Silva,N., Day,T.A., Deplazes,P., Estrada,K., Fernandez,C., Holland,P.W.H., Hou,Junling, Hu,Songnian, Huckvale,Thomas, Hung,S.S., Kamenetzky,L., Keane,J.A., Kiss,F., Koziol,U., Lambert,O., Liu,K., Luo,Xuenong, Luo,Yingfeng, Macchiaroli,N., Nichol,S., Paps,Jordi, Parkinson,J., Pouchkina-Stantcheva,N., Riddiford,N., Rosenzvit,M., Salinas,G., Wasmuth,James D., Zamanian,M., Zheng,Yadong, Cai,Xuepeng, Soberon,X., Olson,P.D., Laclette,J.P., Brehm,Klaus, Berriman,M., Ochoa-Leyva,A.. The genomes of four tapeworm species reveal adaptations to parasitism. Nature, 496 (7443), 57-63.
Open Access Artículo
Artículo
Nacional
230 - Soberon,X.. La medicina genómica en México, consideraciones para su desarrollo. Fortalezas y desafíos de los servicios de salud de México en el siglo XXI. 202-205.
Artículo
Nacional
232 - Bolivar-Zapata,F.G., Arias-Ortiz,C.F., Arriaga-Arellano,E., Barrera-Saldaña,H., de la Torres-Martinez,M., Espinosa-Fernandez,J., Galindo-Fentanes,E., Galvez-Mariscal,A, Gracia-Gasca,A., Herrera-Estrella,L., Larque-Saavedra,A., Lopez-Munguia Canales,A., Noyola-Robles,A., Paredes-Lopez,O., Ramirez-Reivich,O.T., Revah-Moiseev,S., Soberon-Mainero,J., Soberon-Mainero,X., Torres-Pacheco,I., Uribe de la Mora,J., Viniegra-Gonzalez,G.. Por un uso responsable de los organismos genéticamente modificados. Mexico.
Artículo
Internacional
236 - Frausto-Solis,J., Soberon-Mainero,X., Linan-Garcia,E.. MultiQuenching annealing algorithm for protein folding problem. Mexican International Conference on Artificial Intelligence. MICAI 2009: Advances in Artificial Intelligence. Lecture Notes in Computer Science, 578-589.
Open Access Artículo
Artículo
Internacional
242 - Barona-Gomez,F., Ochoa-Leyva,A., Soberon,X.. Advances and perspectives in protein engineering: from natural history to directed evolution of enzymes. Advances in Protein Physical Chemistry. 407-438, Kerala: Research Signpost.
Memoria in extenso
243 - Frausto-Solis,J., Roman,E.F., Romero,D., Soberon,X., Linan-Garcia,E.. Analytically tuned simulated annealing applied to the protein folding problem. Lecture Notes in Computer Science vol 4488. 370-377.
Artículo; Actas Paper
244 - Aguilar-Diaz,H., Bobes,R.J., Carrero,J.C., Camacho-Carranza,R., Cervantes,C., Cevallos,M.A., Davila,G., Rodriguez-Dorantes,M., Escobedo,G., Fernandez,J.L., Fragoso,G., Gaytan,P., Garciarrubio,A., Gonzalez,V.M., Gonzalez,L., Jose,M.V., Jimenez,L., Laclette,J.P., Landa,A., Larralde,C., Morales-Montor,J., Morett,E., Ostoa-Saloma,P., Sciutto,E., Santamaria,R.I., Soberon,X., de la Torre P., Valdes,V., Yanez,J.. The genome project of Taenia solium. Parasitology International, 55 (Suppl), S127-S130.
Open Access Artículo
Revisión
Open Access Artículo
247 - Souza,V., Espinosa-Asuar,L., Escalante,A.E., Eguiarte,L.E., Farmer,J., Forney,L., Lloret,L., Rodriguez-Martinez,J.M., Soberon,X., Dirzo,R., Elser,J.J.. An endangered oasis of aquatic microbial biodiversity in the Chihuahuan desert. Proceedings of the National Academy of Sciences of the United States of America, 103 (17), 6565-6570.
Open Access Nacional
Artículo
Open Access Artículo
Artículo
Open Access Artículo
254 - Osuna,J., Yanez,J., Soberon,X., Gaytan,P.. Protein evolution by codon-based random deletions. Nucleic Acids Research, 32 (17), e136.
Open Access Artículo
Open Access Artículo
Nacional
257 - Soberon,X., Montero,G.M.. Ingeniería de proteínas y evolución dirigida. Fundamentos y casos exitosos de la biotecnologia moderna cap 7. 195-217, Mexico.
Open Access Nacional
Open Access Artículo
Nacional
260 - Soberon,X.. Biocatálisis y evolución dirigida de proteínas. Fronteras de la Biología en los Inicios del Siglo XXI, Módulo VII. 35-45, Mexico,D.F..
Nacional
261 - Soberon,X.. Las proteínas. Biología Celular y Molecular. 43-62, Mexico,D.F.: Pearson.
Open Access Divulgación
262 - Soberon Mainero,X. Veinte años del Instituto de Biotecnología. Revista Universidad de Mexico, 629.
Open Access Artículo
Open Access Artículo
Memoria in extenso
265 - Saab-Rincon,G., Del Rio,G, Santamaria,R, Diaz,M.L, Soberon,X., Lopez-Munguia,A.. Novel and potential applications of alpha-amylases in the food industry. Engineering and Food for the 21st Century. Proceedings of the Eighth International Congress on Engineering and Food. 913-924, Boca Raton, Fla.
Open Access Divulgación
266 - Soberon Mainero, X.. La revolución de las ciencias genómicas. Revista Universidad Nacional, 617.
Open Access Divulgación
Open Access Divulgación
273 - Soberon,X.. El convenio UNAM-INE-Diversa y el aprovechamiento de recursos geneticos. BioTecnologia. Sociedad Mexicana de Biotecnologia y Bioingenieria, 5, 14-15.
Open Access Divulgación
274 - Soberon,X.. Imitar la naturaleza?. ¿Como ves?, 18, 30-33.
Open Access Artículo
Open Access Artículo
Open Access Artículo
Nacional
278 - Soberon,X., Bolivar,F.. Gen y genoma. Ciencias de la Vida: Reestructuracon de conceptos. Aprender a aprender., 9-29, Mexico DF.
News Item
279 - Soberon,X.. Enzymes directly evolving toward commercial applications. Nature Biotechnology, 17 (6), 539-540.
Open Access Artículo
295 - Del Rio,G., Osuna,J., Soberon,X.. Combinatorial libraries of proteins: analysis of efficiency of mutagenesis techniques. Biotechniques, 17 (6), 1132-1139.
Open Access Artículo
Revisión
297 - Osuna,J., Flores,H., Soberon,X.. Microbial systems and directed evolution of protein activities. Critical Reviews in Microbiology, 20 (2), 107-116.
Open Access Artículo
298 - Merino,E., Osuna,J., Bolivar,F., Soberon,X.. A general, PCR-based method for single or combinatorial oligonucleotide-directed mutagenesis on pUC/M13 vectors. Biotechniques, 12 (4), 508-510.
Artículo
Open Access Note
302 - Fuchs,L.Y., Ovando,C., Joseph,P., Soberon,X., Charli,J.L.. Repetitive DNA sequence from the crayfish Procambarus clarkii. Nucleic Acids Research, 18 (6), 1650.
Artículo
303 - Pastor,N., Pinero,D., Valdes,A.M., Soberon,X.. Molecular evolution of class A beta-lactamases: phylogeny and patterns of sequence conservation. Molecular Microbiology, 4 (11), 1957-1965.
Internacional
304 - Balbas,P., Soberon,X., Bolivar,F., Rodriguez,R.L.. The plasmid, pBR322. Biotechnology (Reading, Mass.). 5-41, 10.
Nacional
306 - Oliver,G., Balbas,P., Valle,F., Soberon,X., Bolivar,F.. [Cloning of human leukocyte interferon cDNA and a strategy for its production in E. coli]. Revista Latinoamericana de Microbiologia, 27 (2), 141-150.
Open Access Artículo
308 - Rossi,J.J., Soberon,X., Marumoto,Y., McMahon,J., Itakura,K.. Biological expression of an Escherichia coli consensus sequence promoter and some mutant derivatives. Proceedings of the National Academy of Sciences of the United States of America, 80 (11), 3203-3207. *
Open Access Artículo
309 - Inouye,S., Soberon,X., Franceschini,T., Nakamura,K., Itakura,K., Inouye,M.. Role of positive charge on the amino-terminal region of the signal peptide in protein secretion across the membrane. Proceedings of the National Academy of Sciences of the United States of America, 79 (11), 3438-3441. *
Artículo
Open Access Artículo
311 - Zarucki-Schulz,T., Tsai,S.Y., Itakura,K., Soberon,X., Wallace,R.B., Tsai,M.J., Woo,S.L., O'Malley,B.W.. Point mutagenesis of the ovalbumin gene promoter sequence and its effect on in vitro transcription. Journal of Biological Chemistry, 257 (18), 11070-11077. *
312 - Soberon Mainero, Francisco Xavier. Uso de vehiculos moleculares de clonacion y de sintesis quimica de polinucleotidos para el estadio de la expresion genica. Instituto de Investigaciones Biomedicas, Maestria en Investigacion Biomedica Basica, UNAM. *
Asesor: Itakura, Keiichi, Bolivar Zapata, Francisco

Dr. Francisco Xavier del Espíritu Santo Soberon Mainero

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