Bioinformática
Número de registros: 9
  • Vencidos
  • Regulación de la expresión genética a nivel global en bacterias, PRESUPUESTO UNAM, 2014 - 2020
  • Estudios de regulación de la expresión genética a nivel global en escherichia coli y geobacter sulfurreducens utilizando estrategias de secuenciación masiva y herramientas bioinformáticas, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2012 - 2016
  • Desarrollo de metodologías robustas para el mapeo global de sitios de inicio de la transcripción en escherichia coli y geobacter sulfurreducens mediante secuenciación masiva de extremos 5´trifosfato de los mrna, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2012 - 2014
  • Mapeo global de sitios de inicio de transcripción en escherichia coli y otras bacterias por pirosecuenciación, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2009 - 2012
  • Evolución de las actividades enzimáticas involucradas en la biosíntesis de biotina, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2008 - 2010
  • Estudios estructurales de variantes de hema con actividad de biof obtenidas por evolución dirigida., DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2004 - 2006
  • Evolución de nuevas actividades enzimáticas: implementación de sistemas de selección eficientes para demostrar migración catalítica., CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2002 - 2005
  • Migración de actividad enzimática por medio de evolución dirigida en un sistema de selección muy sensible, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 1999 - 2002
  • Análisis genético de las interacciones moleculares durante la iniciación de la transcripción de bacterias: modificación del factor transcripcional sigma-54, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 1997 - 1998

Nivel D del PRIDE
Nivel III del SNI
  • Doctorado, en Bioquímica, Universidad de Sussex, Laboratorio de Fijacion de Nitrogeno

  • Maestría, en Investigacion Biomedica Basica, UNAM (1986)

  • Licenciatura, Investigacion Biomedica Basica, UNAM (1984)

  • Doctorado
3 - Sanchez Sanchez, Brenda Janice (2012). Estandarizacion de una metodologia para la identificacion de sitios de inicio de la transcripcion dependientes de s70, en escherichia coli k12, mediante mapeo transcripcional in vitro. Instituto de Biotecnologia, Maestria en Ciencias Bioquimicas, UNAM.
Total de publicaciones: 73
  • Tipo
  • Fecha
Open Access Artículo
16 - Aguilar-Ordonez,I., Perez-Villatoro,F., Garcia-Ortiz,H., Barajas-Olmos,F., Ballesteros-Villascan,J., Gonzalez-Buenfil,R., Fresno,C., Garciarrubio,A., Fernandez-Lopez,J.C., Tovar,H., Hernandez-Lemus,E., Orozco,L., Soberon,X., Morett,E. (2021). Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights. PLoS ONE, 16 (4), e0249773, [correction May 25 2022].
Open Access Artículo
18 - Lara,P., Vega-Alvarado,L., Sahonero-Canavesi,D.X., Koenen,M., Villanueva,L., Riveros-McKay,F., Morett,E., Juarez,K. (2021). Transcriptome Analysis Reveals Cr(VI) Adaptation Mechanisms in Klebsiella sp. Strain AqSCr. Frontiers in Microbiology, 12, 656589.
Open Access Artículo
20 - Jasso-Chavez,R., Lira-Silva,E., Gonzalez-Sanchez,K., Larios-Serrato,V., Mendoza-Monzoy,D.L., Perez-Villatoro,F., Morett,E., Vega-Segura,A., Torres-Marquez,M.E., Zepeda-Rodriguez,A., Moreno-Sanchez,R. (2019). Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress. Frontiers in Microbiology, 10, 2432.
Artículo; Actas Paper
Open Access Artículo
23 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X. (2017). Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
Artículo
Open Access Artículo
26 - Meysman,P., Collado-Vides,J., Morett,E., Viola,R., Engelen,K., Laukens,K. (2014). Structural properties of prokaryotic promoter regions correlate with functional features. PLoS ONE, 9 (2), e88717.
Open Access Artículo
27 - Balderas-Martinez,Y.I., Savageau,M., Salgado,H., Perez-Rueda,E., Morett,E., Collado-Vides,J. (2013). Transcription Factors in Escherichia coli Prefer the Holo Conformation. PLoS ONE, 8 (6), e65723.
Open Access Artículo
28 - Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E., Collado-Vides,J. (2013). RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research, 41 (D1), D203-D213.
Artículo
29 - Weiss,V., Medina-Rivera,A., Huerta,A.M., Santos-Zavaleta,A., Salgado,H., Morett,E., Collado-Vides,J. (2013). Evidence classification of high-throughput protocols and confidence integration in RegulonDB. Database (Oxford), 2013, bas059.
Open Access Artículo
34 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J. (2011). RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Research, 39 (Suppl 1), D98-D105.
Artículo
35 - Massimelli,M.J., Sanchez,D.G., Buchieri,M.V., Olvera,L., Beassoni,P.R., Schweizer,H.P., Morett,E., Lisa,A.T. (2011). Choline catabolism, sigma(54) factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene. Microbiological Research, 166 (5), 380-390.
Open Access Revisión
36 - Collado-Vides,J., Salgado,H., Morett,E., Gama-Castro,S., Jimenez-Jacinto,V., Martinez-Flores,I., Medina-Rivera,A., Muniz-Rascado,L., Peralta-Gil,M., Santos-Zavaleta,A. (2009). Bioinformatics resources for the study of gene regulation in bacteria. Journal of Bacteriology, 191 (1), 23-31.
Open Access Artículo
39 - Gama-Castro,S., Jimenez-Jacinto,V., Peralta-Gil,M., Santos-Zavaleta,A., Penaloza-Spinola,M.I., Contreras-Moreira,B., Segura-Salazar,J., Muniz-Rascado,L., Martinez-Flores,I., Salgado,H., Bonavides-Martinez,C., Abreu-Goodger,C., Rodriguez-Penagos,C., Miranda-Rios,J., Morett,E., Merino,E., Huerta,A.M., Trevino-Quintanilla,L., Collado-Vides,J. (2008). RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Research, 36 (Database issue), D120-D124.
Open Access Artículo
41 - Watanabe,R.L., Morett,E., Vallejo,E.E. (2008). Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. BMC Bioinformatics, 9 (1), 285.
Open Access Artículo
42 - Dago,A.E., Wigneshweraraj,S.R., Buck,M., Morett,E. (2007). A role for the conserved GAFTGA motif of AAA transcriptional activators in sensing promoter DNA conformation. Journal of Biological Chemistry, 282 (2), 1087-1097.
Artículo
43 - Hernandez-Urzua,E., Zamorano-Sanchez,D.S., Ponce-Coria,J., Morett,E., Grogan,S., Poole,R.K., Membrillo-Hernandez,J. (2007). Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype. Archives of Microbiology, 187 (1), 67-77.
Artículo; Actas Paper
44 - Aguilar-Diaz,H., Bobes,R.J., Carrero,J.C., Camacho-Carranza,R., Cervantes,C., Cevallos,M.A., Davila,G., Rodriguez-Dorantes,M., Escobedo,G., Fernandez,J.L., Fragoso,G., Gaytan,P., Garciarrubio,A., Gonzalez,V.M., Gonzalez,L., Jose,M.V., Jimenez,L., Laclette,J.P., Landa,A., Larralde,C., Morales-Montor,J., Morett,E., Ostoa-Saloma,P., Sciutto,E., Santamaria,R.I., Soberon,X., de la Torre P., Valdes,V., Yanez,J. (2006). The genome project of Taenia solium. Parasitology International, 55 (Suppl), S127-S130.
Open Access Artículo
45 - Avonce,N., Mendoza-Vargas,A., Morett,E., Iturriaga,G. (2006). Insights on the evolution of trehalose biosynthesis. BMC Evolutionary Biology, 6 (1), 109.
Open Access Artículo
46 - Huerta,A.M., Francino,M.P., Morett,E., Collado-Vides,J. (2006). Selection for Unequal Densities of sigma(70) Promoter-Like Signals in Different Regions of Large Bacterial Genomes. PLoS Genetics, 2 (11), e185.
Artículo
47 - Gaytan,P., Yanez,J., Grande,R., Morett,E., Soberon,X. (2005). Improving random mutagenesis by purification of the oligonucleotide variants. Combinatorial Chemistry & High Throughput Screening, 8 (6), 537-544.
Artículo
49 - Ciria,R., Abreu-Goodger,C., Morett,E., Merino,E. (2004). GeConT: gene context analysis. Bioinformatics, 20 (14), 2307-2308.
Artículo
51 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P. (2003). Systematic discovery of analogous enzymes in thiamin biosynthesis. Nature Biotechnology, 21 (7), 790-795.
Open Access Artículo; Actas
52 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P. (2002). Discovery of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation. Genome Informatics, 13, 365-366.
Artículo
53 - Chaney,M., Grande,R., Wigneshweraraj,S.R., Cannon,W., Casaz,P., Gallegos,M.T., Schumacher,J., Jones,S., Elderkin,S., Dago,A.E., Morett,E., Buck,M. (2001). Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes and Development, 15 (17), 2282-2294.
Artículo
54 - Juarez,K., Flores,H., Davila,S., Olvera,L., Gonzalez,V., Morett,E. (2000). Reciprocal domain evolution within a transactivator in a restricted sequence space. Proceedings of the National Academy of Sciences of the United States of America, 97 (7), 3314-3318.
Open Access Revisión
Artículo
57 - Morett,E., Bork,P. (1999). A novel transactivation domain in parkin. Trends in Biochemical Sciences, 24 (6), 229-231.
Artículo
Open Access Artículo
63 - Valderrama,B., Davalos,A., Girard,L., Morett,E., Mora,J. (1996). Regulatory proteins and cis-acting elements involved in the transcriptional control of Rhizobium etli reiterated nifH genes. Journal of Bacteriology, 178 (11), 3119-3126.
Open Access Artículo
64 - Barrios,H., Fischer,H.M., Hennecke,H., Morett,E. (1995). Overlapping promoters for two different RNA polymerase holoenzymes control Bradyrhizobium japonicum nifA expression. Journal of Bacteriology, 177 (7), 1760-1765. *
Open Access Artículo
66 - Morett,E., Fischer,H.M., Hennecke,H. (1991). Influence of oxygen on DNA binding, positive control, and stability of the Bradyrhizobium japonicum NifA regulatory protein. Journal of Bacteriology, 173 (11), 3478-3487. *
Open Access Artículo
67 - Cannon,W.V., Kreutzer,R., Kent,H.M., Morett,E., Buck,M. (1990). Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites. Nucleic Acids Research, 18 (7), 1693-1701. *
Artículo
68 - Morett,E., Kreutzer,R., Cannon,W., Buck,M. (1990). The influence of the Klebsiella pneumoniae regulatory gene nifL upon the transcriptional activator protein NifA. Molecular Microbiology, 4 (8), 1253-1258. *
Artículo
70 - Morett,E., Moreno,S., Espin,G. (1988). Transcription analysis of the three nifH genes of Rhizobium phaseoli with gene fusions. MGG Molecular & General Genetics, 213 (2-3), 499-504. *
Open Access Artículo
72 - Morett,E., Buck,M. (1988). NifA-dependent in vivo protection demonstrates that the upstream activator sequence of nif promoters is a protein binding site. Proceedings of the National Academy of Sciences of the United States of America, 85 (24), 9401-9405. *
Note
73 - Romero,D., Singleton,P.W., Segovia,L., Morett,E., Benbohlool,B., Palacios,R., Davila,G. (1988). Effect of Naturally Occurring nif Reiterations on Symbiotic Effectiveness in Rhizobium phaseoli. Applied and Environmental Microbiology, 54 (3), 848-850. *
Open Access Note
74 - Calderon,J., Morett,E., Mora,J. (1985). Omega-amidase pathway in the degradation of glutamine in Neurospora crassa. Journal of Bacteriology, 161 (2), 807-809. *
Nacional
76 - Gonzalez,G., Labastida,A., Jimenez,V., Vega,L., Olvera,M., Morett,E., Juarez,K. (2015). Genes involved in electron transfer mechanism in g. Sulfurreducens. Environmental Biotechnology and Engineering-2014. 1269-1276, 3, Mexico D.F..
Internacional
78 - Tapia,J.J., Morett,E., Vallejo,E.E. (2009). A clustering genetic algorithm for genomic data mining. Foundations of Computational Intelligence . Studies in Computational Intelligence, 249-275, 4, Berlin, Heidelberg: Springer.
Memoria in extenso
79 - Tapia,J.J., Vallejo,E.E., Morett,E. (2009). MOCEA: A multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions. Proceedings of the 11th Annual Genetic and Evolutionary Computation Conference, GECCO-2009. 1793-1794.
Memoria in extenso
80 - Molina-Lozano,H., Vallejo-Clemente,E.E., Morett-Sanchez,J.E. (2008). DNA sequence analysis using fuzzy grammars. IEEE International Conference on Fuzzy Systems. 1915-1921.
Memoria in extenso
81 - Martínez,M., Vallejo,E.E., Morett,E. (2007). Ancestral DNA sequence reconstruction using recursive genetic algorithms. Lecture Notes in Computer Science, vol 4828 cap 4. 390-400.
Memoria in extenso
82 - Fernandez,J.C., Vallejo,E.E., Morett,E. (2006). Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles. Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on. 1-8.
Memoria in extenso
83 - Watanabe,R., Vallejo,E.E., Morett,E. (2006). Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB'06. 400-405.
Internacional
84 - Morett,E., Saab-Rincon,G., Merino,E., Bork,P., Rajan,E., Olvera,L., Olvera,M. (2003). High rate of gene displacement in vitamin biosynthesis pathways. Bioinformatics and genomes: current perspectives. 69-79, Norfolk,U.K..
Nacional
85 - Morett,E. (2001). Genetic regulation of nitrogen fixation: from ammonia ssimilation to protein evolution. Nitrogen Fixation Research Center XX Anniversary. 180-183.
Open Access nacional divulgación
86 - Aguilar,I., Guzman,J., Miron,F., Morett,E. (2021). Conociendo el Genoma Indígena Mexicano: el proyecto 100G-MX. Biotecnologia en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 26, 8-15.
Open Access Artículo
89 - Aguilar-Ordonez,I., Perez-Villatoro,F., Garcia-Ortiz,H., Barajas-Olmos,F., Ballesteros-Villascan,J., Gonzalez-Buenfil,R., Fresno,C., Garciarrubio,A., Fernandez-Lopez,J.C., Tovar,H., Hernandez-Lemus,E., Orozco,L., Soberon,X., Morett,E.. Whole genome variation in 27 Mexican indigenous populations, demographic and biomedical insights. PLoS ONE, 16 (4), e0249773, [correction May 25 2022].
Open Access Artículo
Open Access Artículo
91 - Lara,P., Vega-Alvarado,L., Sahonero-Canavesi,D.X., Koenen,M., Villanueva,L., Riveros-McKay,F., Morett,E., Juarez,K.. Transcriptome Analysis Reveals Cr(VI) Adaptation Mechanisms in Klebsiella sp. Strain AqSCr. Frontiers in Microbiology, 12, 656589.
Open Access Artículo
Open Access nacional divulgación
93 - Aguilar,I., Guzman,J., Miron,F., Morett,E.. Conociendo el Genoma Indígena Mexicano: el proyecto 100G-MX. Biotecnologia en Movimiento.Revista de divulgación del Instituto de Biotecnología de la UNAM, 26, 8-15.
Open Access Artículo
94 - Jasso-Chavez,R., Lira-Silva,E., Gonzalez-Sanchez,K., Larios-Serrato,V., Mendoza-Monzoy,D.L., Perez-Villatoro,F., Morett,E., Vega-Segura,A., Torres-Marquez,M.E., Zepeda-Rodriguez,A., Moreno-Sanchez,R.. Marine Archaeon Methanosarcina acetivorans Enhances Polyphosphate Metabolism Under Persistent Cadmium Stress. Frontiers in Microbiology, 10, 2432.
Artículo; Actas Paper
Artículo; Actas Paper
Open Access Artículo
97 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X.. Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
Nacional
99 - Gonzalez,G., Labastida,A., Jimenez,V., Vega,L., Olvera,M., Morett,E., Juarez,K.. Genes involved in electron transfer mechanism in g. Sulfurreducens. Environmental Biotechnology and Engineering-2014. 1269-1276, 3, Mexico D.F..
Nacional
Artículo
Open Access Artículo
102 - Meysman,P., Collado-Vides,J., Morett,E., Viola,R., Engelen,K., Laukens,K.. Structural properties of prokaryotic promoter regions correlate with functional features. PLoS ONE, 9 (2), e88717.
Open Access Artículo
103 - Balderas-Martinez,Y.I., Savageau,M., Salgado,H., Perez-Rueda,E., Morett,E., Collado-Vides,J.. Transcription Factors in Escherichia coli Prefer the Holo Conformation. PLoS ONE, 8 (6), e65723.
Open Access Artículo
104 - Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E., Collado-Vides,J.. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more. Nucleic Acids Research, 41 (D1), D203-D213.
Artículo
105 - Weiss,V., Medina-Rivera,A., Huerta,A.M., Santos-Zavaleta,A., Salgado,H., Morett,E., Collado-Vides,J.. Evidence classification of high-throughput protocols and confidence integration in RegulonDB. Database (Oxford), 2013, bas059.
Open Access Artículo
110 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J.. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units). Nucleic Acids Research, 39 (Suppl 1), D98-D105.
Artículo
111 - Massimelli,M.J., Sanchez,D.G., Buchieri,M.V., Olvera,L., Beassoni,P.R., Schweizer,H.P., Morett,E., Lisa,A.T.. Choline catabolism, sigma(54) factor and NtrC are required for the full expression of the Pseudomonas aeruginosa phosphorylcholine phosphatase gene. Microbiological Research, 166 (5), 380-390.
Open Access Revisión
112 - Collado-Vides,J., Salgado,H., Morett,E., Gama-Castro,S., Jimenez-Jacinto,V., Martinez-Flores,I., Medina-Rivera,A., Muniz-Rascado,L., Peralta-Gil,M., Santos-Zavaleta,A.. Bioinformatics resources for the study of gene regulation in bacteria. Journal of Bacteriology, 191 (1), 23-31.
Open Access Artículo
Open Access Artículo
Internacional
115 - Tapia,J.J., Morett,E., Vallejo,E.E.. A clustering genetic algorithm for genomic data mining. Foundations of Computational Intelligence . Studies in Computational Intelligence, 249-275, 4, Berlin, Heidelberg: Springer.
Memoria in extenso
116 - Tapia,J.J., Vallejo,E.E., Morett,E.. MOCEA: A multi-objective clustering evolutionary algorithm for inferring protein-protein functional interactions. Proceedings of the 11th Annual Genetic and Evolutionary Computation Conference, GECCO-2009. 1793-1794.
Open Access Artículo
117 - Gama-Castro,S., Jimenez-Jacinto,V., Peralta-Gil,M., Santos-Zavaleta,A., Penaloza-Spinola,M.I., Contreras-Moreira,B., Segura-Salazar,J., Muniz-Rascado,L., Martinez-Flores,I., Salgado,H., Bonavides-Martinez,C., Abreu-Goodger,C., Rodriguez-Penagos,C., Miranda-Rios,J., Morett,E., Merino,E., Huerta,A.M., Trevino-Quintanilla,L., Collado-Vides,J.. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation. Nucleic Acids Research, 36 (Database issue), D120-D124.
Artículo
Open Access Artículo
119 - Watanabe,R.L., Morett,E., Vallejo,E.E.. Inferring modules of functionally interacting proteins using the Bond Energy Algorithm. BMC Bioinformatics, 9 (1), 285.
Memoria in extenso
120 - Molina-Lozano,H., Vallejo-Clemente,E.E., Morett-Sanchez,J.E.. DNA sequence analysis using fuzzy grammars. IEEE International Conference on Fuzzy Systems. 1915-1921.
Open Access Artículo
121 - Dago,A.E., Wigneshweraraj,S.R., Buck,M., Morett,E.. A role for the conserved GAFTGA motif of AAA transcriptional activators in sensing promoter DNA conformation. Journal of Biological Chemistry, 282 (2), 1087-1097.
Artículo
122 - Hernandez-Urzua,E., Zamorano-Sanchez,D.S., Ponce-Coria,J., Morett,E., Grogan,S., Poole,R.K., Membrillo-Hernandez,J.. Multiple regulators of the Flavohaemoglobin (hmp) gene of Salmonella enterica serovar Typhimurium include RamA, a transcriptional regulator conferring the multidrug resistance phenotype. Archives of Microbiology, 187 (1), 67-77.
Memoria in extenso
123 - Martínez,M., Vallejo,E.E., Morett,E.. Ancestral DNA sequence reconstruction using recursive genetic algorithms. Lecture Notes in Computer Science, vol 4828 cap 4. 390-400.
Artículo; Actas Paper
124 - Aguilar-Diaz,H., Bobes,R.J., Carrero,J.C., Camacho-Carranza,R., Cervantes,C., Cevallos,M.A., Davila,G., Rodriguez-Dorantes,M., Escobedo,G., Fernandez,J.L., Fragoso,G., Gaytan,P., Garciarrubio,A., Gonzalez,V.M., Gonzalez,L., Jose,M.V., Jimenez,L., Laclette,J.P., Landa,A., Larralde,C., Morales-Montor,J., Morett,E., Ostoa-Saloma,P., Sciutto,E., Santamaria,R.I., Soberon,X., de la Torre P., Valdes,V., Yanez,J.. The genome project of Taenia solium. Parasitology International, 55 (Suppl), S127-S130.
Open Access Artículo
125 - Avonce,N., Mendoza-Vargas,A., Morett,E., Iturriaga,G.. Insights on the evolution of trehalose biosynthesis. BMC Evolutionary Biology, 6 (1), 109.
Open Access Artículo
126 - Huerta,A.M., Francino,M.P., Morett,E., Collado-Vides,J.. Selection for Unequal Densities of sigma(70) Promoter-Like Signals in Different Regions of Large Bacterial Genomes. PLoS Genetics, 2 (11), e185.
Memoria in extenso
127 - Fernandez,J.C., Vallejo,E.E., Morett,E.. Fuzzy C-means for inferring functional coupling of proteins from their phylogenetic profiles. Computational Intelligence and Bioinformatics and Computational Biology, 2006. CIBCB '06. 2006 IEEE Symposium on. 1-8.
Memoria in extenso
128 - Watanabe,R., Vallejo,E.E., Morett,E.. Inferring functional coupling of proteins using the Evolutionary Bond Energy Algorithm. Proceedings of the 2006 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, CIBCB'06. 400-405.
Artículo
129 - Gaytan,P., Yanez,J., Grande,R., Morett,E., Soberon,X.. Improving random mutagenesis by purification of the oligonucleotide variants. Combinatorial Chemistry & High Throughput Screening, 8 (6), 537-544.
Artículo
133 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P.. Systematic discovery of analogous enzymes in thiamin biosynthesis. Nature Biotechnology, 21 (7), 790-795.
Internacional
134 - Morett,E., Saab-Rincon,G., Merino,E., Bork,P., Rajan,E., Olvera,L., Olvera,M.. High rate of gene displacement in vitamin biosynthesis pathways. Bioinformatics and genomes: current perspectives. 69-79, Norfolk,U.K..
Open Access Artículo; Actas
135 - Morett,E., Korbel,J.O., Rajan,E., Saab-Rincon,G., Olvera,L., Olvera,M., Schmidt,S., Snel,B., Bork,P.. Discovery of Analogous Enzymes in Thiamin Biosynthesis by Anticorrelation. Genome Informatics, 13, 365-366.
Artículo
136 - Chaney,M., Grande,R., Wigneshweraraj,S.R., Cannon,W., Casaz,P., Gallegos,M.T., Schumacher,J., Jones,S., Elderkin,S., Dago,A.E., Morett,E., Buck,M.. Binding of transcriptional activators to sigma 54 in the presence of the transition state analog ADP-aluminum fluoride: insights into activator mechanochemical action. Genes and Development, 15 (17), 2282-2294.
Nacional
137 - Morett,E.. Genetic regulation of nitrogen fixation: from ammonia ssimilation to protein evolution. Nitrogen Fixation Research Center XX Anniversary. 180-183.
Artículo
138 - Juarez,K., Flores,H., Davila,S., Olvera,L., Gonzalez,V., Morett,E.. Reciprocal domain evolution within a transactivator in a restricted sequence space. Proceedings of the National Academy of Sciences of the United States of America, 97 (7), 3314-3318.
Open Access Revisión
Artículo
Artículo
141 - Morett,E., Bork,P.. A novel transactivation domain in parkin. Trends in Biochemical Sciences, 24 (6), 229-231.
Open Access Artículo
Open Access Artículo
Open Access Artículo
Open Access Artículo
151 - Cannon,W.V., Kreutzer,R., Kent,H.M., Morett,E., Buck,M.. Activation of the Klebsiella pneumoniae nifU promoter: identification of multiple and overlapping upstream NifA binding sites. Nucleic Acids Research, 18 (7), 1693-1701. *
Artículo
152 - Morett,E., Kreutzer,R., Cannon,W., Buck,M.. The influence of the Klebsiella pneumoniae regulatory gene nifL upon the transcriptional activator protein NifA. Molecular Microbiology, 4 (8), 1253-1258. *
Artículo
Open Access Artículo
Open Access Artículo
156 - Morett,E., Buck,M.. NifA-dependent in vivo protection demonstrates that the upstream activator sequence of nif promoters is a protein binding site. Proceedings of the National Academy of Sciences of the United States of America, 85 (24), 9401-9405. *
Note
157 - Romero,D., Singleton,P.W., Segovia,L., Morett,E., Benbohlool,B., Palacios,R., Davila,G.. Effect of Naturally Occurring nif Reiterations on Symbiotic Effectiveness in Rhizobium phaseoli. Applied and Environmental Microbiology, 54 (3), 848-850. *
Open Access Note
159 - Calderon,J., Morett,E., Mora,J.. Omega-amidase pathway in the degradation of glutamine in Neurospora crassa. Journal of Bacteriology, 161 (2), 807-809. *
Artículo