M.C. Veronica Jimenez Jacinto
Técnica Académica Titular C Tiempo Completo
Nivel D del PRIDE
- Activos
- Graduados
-
Estancia Temporal
1 - Salgado Martinez, Yuren Joshua (2024). Generación de sistema de inventarios.
Ingeniero en ciencias computacionales,
Instituto Tecnologico de Zacatepec.
*
Asesor: Jimenez Jacinto, Veronica
Total de publicaciones: 33
- Tipo
- Fecha
Artículo
2 - Beltran-Hernandez,N.E., Cardenas,L., Jimenez-Jacinto,V., Vega-Alvarado,L., Rivera,H.M. (2025). Biological activity of biomarkers associated to metastasis in osteosarcoma cell lines.
Cancer Medicine,
14 (6),
e70391.
Artículo
3 - Juarez-Gutierrez,M.E., Martinez-Chavez,C.C., Godoy-Figueroa,C.Y., Jimenez-Jacinto,V., Rios-Duran,M.G., Martinez-Palacios,C.A., Navarrete-Ramirez,P. (2024). Effects of Feeding Frequency on Liver Transcriptome: Unveiling Appetite-Regulating Peptides in Mexican Pike Silverside (Chirostoma estor).
Fishes,
9 (10),
393.
Artículo
4 - Maza-Lopez,J., Jimenez-Jacinto,V., Bermudez-Morales,V.H., Alonso-Morales,R.A., Reyes-Guerrero,D.E., Higuera-Piedrahita,R.I., Camas-Pereyra,R., Lopez-Arellano,M.E. (2024). Molecular study of the transcription factor SKN-1 and its putative relationship with genes that encode GST and antioxidant enzymes in Haemonchus contortus.
Veterinary Parasitology,
331,
110255.
Artículo
5 - Baza-Moreno,J.D., Vega-Alvarado,L., Ibarra-Nunez,G., Guillen-Navarro,K., Garcia-Fajardo,L.V., Jimenez-Jacinto,V., Diego-Garcia,E. (2023). Transcriptome analysis of the spider Phonotimpus pennimani reveals novel toxin transcripts.
Journal of Venomous Animals and Toxins Including Tropical Diseases,
29,
e20220031.
Artículo
6 - Reyes-Guerrero,D.E., Jimenez-Jacinto,V., Alonso-Morales,R.A., Alonso-Diaz,M.A., Maza-Lopez,J., Camas-Pereyra,R., Olmedo-Juarez,A., Higuera-Piedrahita,R.I., Lopez-Arellano,M.E. (2023). Assembly and Analysis of Haemonchus contortus Transcriptome as a Tool for the Knowledge of Ivermectin Resistance Mechanisms.
Pathogens,
12 (3),
499.
Artículo
7 - Corona-Herrera,G.A., Navarrete-Ramirez,P., Sanchez-Flores,F.A., Jimenez-Jacinto,V., Martinez-Palacios,C.A., Palomera-Sanchez,Z., Volkoff,H., Martinez-Chavez,C.C. (2022). Shining light on the transcriptome: Molecular regulatory networks leading to a fast-growth phenotype by continuous light in an environmentally sensitive teleost (Atherinopsidae).
Journal of photochemistry and photobiology.B, Biology,
235,
112550.
Artículo
8 - Sanchez-Correa,M.D.S., Isidra-Arellano,M.C., Pozas-Rodriguez,E.A., Reyero-Saavedra,M.D.R., Morales-Salazar,A., Del Castillo,S.M.L., Sanchez-Flores,A., Jimenez-Jacinto,V., Reyes,J.L., Formey,D., Valdes-Lopez,O. (2022). Argonaute5 and its associated small RNAs modulate the transcriptional response during the rhizobia-Phaseolus vulgaris symbiosis.
Frontiers in Plant Science,
13,
1034419.
Artículo
9 - Vichi,J., Salazar,E., Jimenez-Jacinto,V., Olvera-Rodriguez,L., Grande,R., Dantan-Gonzalez,E., Morett,E., Hernandez-Mendoza,A. (2021). High-throughput transcriptome sequencing and comparative analysis of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth.
PLoS ONE,
16 (3),
e0248513.
Artículo
10 - Gonzalez,L.M., Estrada,K., Grande,R., Jimenez-Jacinto,V., Vega-Alvarado,L., Sevilla,E., Barrera,J., Cuesta,I., Zaballos,A., Bautista,J.M., Lobo,C.A., Sanchez-Flores,A., Montero,E. (2019). Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes.
PLoS Neglected Tropical Diseases,
13 (8),
e0007680.
Artículo
11 - Jimenez-Jacinto,V., Sanchez-Flores,A., Vega-Alvarado,L. (2019). Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis.
Frontiers in Genetics,
10,
279.
Artículo
12 - Solano de la Cruz M.T., Adame-Garcia,J., Gregorio-Jorge,J., Jimenez-Jacinto,V., Vega-Alvarado,L., Iglesias-Andreu,L.G., Escobar-Hernandez,E.E., Luna-Rodriguez,M. (2019). Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae.
BMC Genomics,
20 (1),
826.
Artículo
13 - Chowdhury-Paul, S., Pando-Robles, V., Jimenez-Jacinto, V., Segura, D., Espin, G., Nunez, C. (2018). Proteomic analysis revealed proteins induced upon Azotobacter vinelandii encystment.
Journal of Proteomics,
181,
47-59.
Artículo
14 - Sanchez-Pozos, K., Ortiz-Lopez, M.G., Pena-Espinoza, B.I., Granados-Silvestre, M.A., Jimenez-Jacinto, V., Verleyen, J., Tekola-Ayele, F., Sanchez-Flores, A., Menjivar, M. (2018). Whole-exome sequencing in maya indigenous families: variant in PPP1R3A is associated with type 2 diabetes.
Molecular Genetics and Genomics,
293 (5),
1205-1216.
Artículo
15 - Olvera, A., Martyniuk, C.J., Buisine, N., Jimenez-Jacinto, V., Sanchez-Flores, A., Sachs, L.M., Orozco, A. (2017). Differential transcriptome regulation by 3,5-T2 and 3',3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia.
Scientific Reports,
7 (1),
15043.
Artículo
16 - Gonzalez,G., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Olvera,M., Morett,E., Juarez,K. (2016). Global transcriptional start site mapping in Geobacter sulfurreducens during growth with two different electron acceptors.
Fems Microbiology Letters,
363 (17),
fnw175.
Artículo
17 - Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E., Collado-Vides,J. (2013). RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Nucleic Acids Research,
41 (D1),
D203-D213.
Artículo
18 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J. (2011). RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Research,
39 (Suppl 1),
D98-D105.
Artículo
19 - Demir,E., Cary,M.P., Paley,S., Fukuda,K., Lemer,C., Vastrik,I., Wu,G., D'Eustachio,P., Schaefer,C., Luciano,J., Schacherer,F., Martinez-Flores,I., Hu,Z., Jimenez-Jacinto,V., Joshi-Tope,G., Kandasamy,K., Lopez-Fuentes,A.C., Mi,H., Pichler,E., Rodchenkov,I., Splendiani,A., Tkachev,S., Zucker,J., Gopinath,G., Rajasimha,H., Ramakrishnan,R., Shah,I., Syed,M., Anwar,N., Babur,O., Blinov,M., Brauner,E., Corwin,D., Donaldson,S., Gibbons,F., Goldberg,R., Hornbeck,P., Luna,A., Murray-Rust,P., Neumann,E., Reubenacker,O., Samwald,M., van Iersel,M., Wimalaratne,S., Allen,K., Braun,B., Whirl-Carrillo,M., Cheung,K.H., Dahlquist,K., Finney,A., Gillespie,M., Glass,E., Gong,L., Haw,R., Honig,M., Hubaut,O., Kane,D., Krupa,S., Kutmon,M., Leonard,J., Marks,D., Merberg,D., Petri,V., Pico,A., Ravenscroft,D., Ren,L., Shah,N., Sunshine,M., Tang,R., Whaley,R., Letovksy,S., Buetow,K.H., Rzhetsky,A., Schachter,V., Sobral,B.S., Dogrusoz,U., McWeeney,S., Aladjem,M., Birney,E., Collado-Vides,J., Goto,S., Hucka,M., Le Novere,N., Maltsev,N., Pandey,A., Thomas,P., Wingender,E., Karp,P.D., Sander,C., Bader,G.D. (2010). The BioPAX community standard for pathway data sharing.
Nature Biotechnology,
28 (9),
935-942 (corrigendum vol 30 p 365 2012).
*
Artículo
20 - Martinez-Flores,I., Jimenez-Jacinto,V., Lopez-Fuentes,A., Collado-Vides,J. (2010). Expanding BioPAX format by integrating Gene Regulation.
EMBnet.journal,
16 (1),
39-43.
*
Revisión
21 - Collado-Vides,J., Salgado,H., Morett,E., Gama-Castro,S., Jimenez-Jacinto,V., Martinez-Flores,I., Medina-Rivera,A., Muniz-Rascado,L., Peralta-Gil,M., Santos-Zavaleta,A. (2009). Bioinformatics resources for the study of gene regulation in bacteria.
Journal of Bacteriology,
191 (1),
23-31.
Artículo
22 - Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J., Morett,E. (2009). Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
PLoS ONE,
4 (10),
e7526.
Artículo
23 - Gama-Castro,S., Jimenez-Jacinto,V., Peralta-Gil,M., Santos-Zavaleta,A., Penaloza-Spinola,M.I., Contreras-Moreira,B., Segura-Salazar,J., Muniz-Rascado,L., Martinez-Flores,I., Salgado,H., Bonavides-Martinez,C., Abreu-Goodger,C., Rodriguez-Penagos,C., Miranda-Rios,J., Morett,E., Merino,E., Huerta,A.M., Trevino-Quintanilla,L., Collado-Vides,J. (2008). RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Nucleic Acids Research,
36 (Database issue),
D120-D124.
Artículo
24 - Gonzalez, V., Santamaria, R. I., Bustos, P., Hernandez-Gonzalez, I., Medrano-Soto, A., Moreno-Hagelsieb, G., Janga, S. C., Ramirez, M. A., Jimenez-Jacinto, V., Collado-Vides, J., Davila, G. (2006). The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons.
Proceedings of the National Academy of Sciences of the United States of America,
103 (10),
3834-3839.
*
Artículo
25 - Martinez-Antonio,A., Salgado,H., Gama-Castro,S., Gutierrez-Rios,R.M., Jimenez-Jacinto,V., Collado-Vides,J. (2003). Environmental conditions and transcriptional regulation in Escherichia coli: A physiological integrative approach.
Biotechnology and Bioengineering,
84 (7),
743-749.
*
Memoria in extenso
26 - Reyes-Guerrero,D.E., Jimenez-Jacinto,V., Alonso-Diaz,M.A., Alonso-Morales,D.A., Maza-Lopez,J., Camas-Pereyra,R., Lopez-Arellano,M.E. (2022). Anotación y enriquecimiento funcional del trancriptoma ensamblado a partir de dos aislados de Haemonchus contortus susceptible y resistente a ivermectina. LVII Reunión Nacional de Investigación Pecuaria. Memoria. Villahermosa.Tabasco, 9 - 12 de nov. 2022.
96-98.
Revisión
27 - Jimenez-Jacinto,V., Gomez-Romero,L., Mendez-Cruz,C.F. (2020). Pattern Recognition Applied to the Analysis of Genomic Data and Its Association to Diseases. Pattern Recognition Techniques Applied to Biomedical Problems.
STEAM-H: Science, Technology, Engineering, Agriculture, Mathematics & Health,
35-61,
Cham: Springer International Publishing.
Nacional
28 - Gonzalez,G., Labastida,A., Jimenez,V., Vega,L., Olvera,M., Morett,E., Juarez,K. (2015). Genes involved in electron transfer mechanism in g. Sulfurreducens. Environmental Biotechnology and Engineering-2014.
1269-1276,
3,
Mexico D.F..
Nacional divulgación
29 - Carrera-Reyna,M., Jimenez-Jacinto,V., Gutierrez-Rios,R.M. (2025). Descifrando la información genética.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Nacional divulgación
30 - Chavez-Fuentes,J.C., Godoy-Lozano,E., Jimenez-Jacinto,V., Vega-Alvarado,L. (2025). R-Ladies: Promoviendo la inclusión en el lenguaje de programación R.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Nacional divulgación
31 - Jimenez-Jacinto,V., Carrera-Reyna,M., Gutierrez-Rios,R.M., Ainsworth,S. (2025). Ecos del algoritmo: la evolución de la bioinformática en México.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Nacional divulgación
32 - Jimenez-Jacinto,V. (2021). R-Ladies: solidaridad y compromiso de una comunidad de profesionistas.
Revista Digital Universitaria,
22 (1).
Preprint
33 - Solano de la Cruz,M.T., Adame-Garcia,J., Gregorio-Jorge,J., Jimenez-Jacinto,V., Vega-Alvarado,L., Iglesias-Andreu,L., Escobar-Hernandez,E.E., Luna-Rodriguez,M. (2019). Increase in ribosomal proteins activity: Translational reprogramming in Vanilla planifolia Jacks., against Fusarium infection.
bioRxiv,
Preprint posted June 05, 2019,
660860.
Divulgación
34 - Jimenez-Jacinto, V., Escobar-Zepeda, A., Godoy, E., Vega-Alvarado, L., Verleyen, J., Estrada, K., Sanchez-Flores, A. (2017). El metagenoma del taco.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
8,
29-32.
Artículo
35 - Beltran-Hernandez,N.E., Cardenas,L., Jimenez-Jacinto,V., Vega-Alvarado,L., Rivera,H.M.. Biological activity of biomarkers associated to metastasis in osteosarcoma cell lines.
Cancer Medicine,
14 (6),
e70391.
Nacional divulgación
36 - Carrera-Reyna,M., Jimenez-Jacinto,V., Gutierrez-Rios,R.M.. Descifrando la información genética.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Nacional divulgación
37 - Chavez-Fuentes,J.C., Godoy-Lozano,E., Jimenez-Jacinto,V., Vega-Alvarado,L.. R-Ladies: Promoviendo la inclusión en el lenguaje de programación R.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Nacional divulgación
38 - Jimenez-Jacinto,V., Carrera-Reyna,M., Gutierrez-Rios,R.M., Ainsworth,S.. Ecos del algoritmo: la evolución de la bioinformática en México.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
10 (40).
Artículo
39 - Juarez-Gutierrez,M.E., Martinez-Chavez,C.C., Godoy-Figueroa,C.Y., Jimenez-Jacinto,V., Rios-Duran,M.G., Martinez-Palacios,C.A., Navarrete-Ramirez,P.. Effects of Feeding Frequency on Liver Transcriptome: Unveiling Appetite-Regulating Peptides in Mexican Pike Silverside (Chirostoma estor).
Fishes,
9 (10),
393.
Artículo
40 - Maza-Lopez,J., Jimenez-Jacinto,V., Bermudez-Morales,V.H., Alonso-Morales,R.A., Reyes-Guerrero,D.E., Higuera-Piedrahita,R.I., Camas-Pereyra,R., Lopez-Arellano,M.E.. Molecular study of the transcription factor SKN-1 and its putative relationship with genes that encode GST and antioxidant enzymes in Haemonchus contortus.
Veterinary Parasitology,
331,
110255.
Artículo
41 - Baza-Moreno,J.D., Vega-Alvarado,L., Ibarra-Nunez,G., Guillen-Navarro,K., Garcia-Fajardo,L.V., Jimenez-Jacinto,V., Diego-Garcia,E.. Transcriptome analysis of the spider Phonotimpus pennimani reveals novel toxin transcripts.
Journal of Venomous Animals and Toxins Including Tropical Diseases,
29,
e20220031.
Artículo
42 - Reyes-Guerrero,D.E., Jimenez-Jacinto,V., Alonso-Morales,R.A., Alonso-Diaz,M.A., Maza-Lopez,J., Camas-Pereyra,R., Olmedo-Juarez,A., Higuera-Piedrahita,R.I., Lopez-Arellano,M.E.. Assembly and Analysis of Haemonchus contortus Transcriptome as a Tool for the Knowledge of Ivermectin Resistance Mechanisms.
Pathogens,
12 (3),
499.
Artículo
43 - Corona-Herrera,G.A., Navarrete-Ramirez,P., Sanchez-Flores,F.A., Jimenez-Jacinto,V., Martinez-Palacios,C.A., Palomera-Sanchez,Z., Volkoff,H., Martinez-Chavez,C.C.. Shining light on the transcriptome: Molecular regulatory networks leading to a fast-growth phenotype by continuous light in an environmentally sensitive teleost (Atherinopsidae).
Journal of photochemistry and photobiology.B, Biology,
235,
112550.
Artículo
44 - Sanchez-Correa,M.D.S., Isidra-Arellano,M.C., Pozas-Rodriguez,E.A., Reyero-Saavedra,M.D.R., Morales-Salazar,A., Del Castillo,S.M.L., Sanchez-Flores,A., Jimenez-Jacinto,V., Reyes,J.L., Formey,D., Valdes-Lopez,O.. Argonaute5 and its associated small RNAs modulate the transcriptional response during the rhizobia-Phaseolus vulgaris symbiosis.
Frontiers in Plant Science,
13,
1034419.
Memoria in extenso
45 - Reyes-Guerrero,D.E., Jimenez-Jacinto,V., Alonso-Diaz,M.A., Alonso-Morales,D.A., Maza-Lopez,J., Camas-Pereyra,R., Lopez-Arellano,M.E.. Anotación y enriquecimiento funcional del trancriptoma ensamblado a partir de dos aislados de Haemonchus contortus susceptible y resistente a ivermectina. LVII Reunión Nacional de Investigación Pecuaria. Memoria. Villahermosa.Tabasco, 9 - 12 de nov. 2022.
96-98.
Artículo
46 - Vichi,J., Salazar,E., Jimenez-Jacinto,V., Olvera-Rodriguez,L., Grande,R., Dantan-Gonzalez,E., Morett,E., Hernandez-Mendoza,A.. High-throughput transcriptome sequencing and comparative analysis of Escherichia coli and Schizosaccharomyces pombe in respiratory and fermentative growth.
PLoS ONE,
16 (3),
e0248513.
Nacional divulgación
47 - Jimenez-Jacinto,V.. R-Ladies: solidaridad y compromiso de una comunidad de profesionistas.
Revista Digital Universitaria,
22 (1).
Revisión
48 - Jimenez-Jacinto,V., Gomez-Romero,L., Mendez-Cruz,C.F.. Pattern Recognition Applied to the Analysis of Genomic Data and Its Association to Diseases. Pattern Recognition Techniques Applied to Biomedical Problems.
STEAM-H: Science, Technology, Engineering, Agriculture, Mathematics & Health,
35-61,
Cham: Springer International Publishing.
Artículo
49 - Gonzalez,L.M., Estrada,K., Grande,R., Jimenez-Jacinto,V., Vega-Alvarado,L., Sevilla,E., Barrera,J., Cuesta,I., Zaballos,A., Bautista,J.M., Lobo,C.A., Sanchez-Flores,A., Montero,E.. Comparative and functional genomics of the protozoan parasite Babesia divergens highlighting the invasion and egress processes.
PLoS Neglected Tropical Diseases,
13 (8),
e0007680.
Artículo
50 - Jimenez-Jacinto,V., Sanchez-Flores,A., Vega-Alvarado,L.. Integrative Differential Expression Analysis for Multiple EXperiments (IDEAMEX): A Web Server Tool for Integrated RNA-Seq Data Analysis.
Frontiers in Genetics,
10,
279.
Artículo
51 - Solano de la Cruz M.T., Adame-Garcia,J., Gregorio-Jorge,J., Jimenez-Jacinto,V., Vega-Alvarado,L., Iglesias-Andreu,L.G., Escobar-Hernandez,E.E., Luna-Rodriguez,M.. Functional categorization of de novo transcriptome assembly of Vanilla planifolia Jacks. potentially points to a translational regulation during early stages of infection by Fusarium oxysporum f. sp. vanillae.
BMC Genomics,
20 (1),
826.
Preprint
52 - Solano de la Cruz,M.T., Adame-Garcia,J., Gregorio-Jorge,J., Jimenez-Jacinto,V., Vega-Alvarado,L., Iglesias-Andreu,L., Escobar-Hernandez,E.E., Luna-Rodriguez,M.. Increase in ribosomal proteins activity: Translational reprogramming in Vanilla planifolia Jacks., against Fusarium infection.
bioRxiv,
Preprint posted June 05, 2019,
660860.
Artículo
53 - Chowdhury-Paul, S., Pando-Robles, V., Jimenez-Jacinto, V., Segura, D., Espin, G., Nunez, C.. Proteomic analysis revealed proteins induced upon Azotobacter vinelandii encystment.
Journal of Proteomics,
181,
47-59.
Artículo
54 - Sanchez-Pozos, K., Ortiz-Lopez, M.G., Pena-Espinoza, B.I., Granados-Silvestre, M.A., Jimenez-Jacinto, V., Verleyen, J., Tekola-Ayele, F., Sanchez-Flores, A., Menjivar, M.. Whole-exome sequencing in maya indigenous families: variant in PPP1R3A is associated with type 2 diabetes.
Molecular Genetics and Genomics,
293 (5),
1205-1216.
Artículo
55 - Olvera, A., Martyniuk, C.J., Buisine, N., Jimenez-Jacinto, V., Sanchez-Flores, A., Sachs, L.M., Orozco, A.. Differential transcriptome regulation by 3,5-T2 and 3',3,5-T3 in brain and liver uncovers novel roles for thyroid hormones in tilapia.
Scientific Reports,
7 (1),
15043.
Divulgación
56 - Jimenez-Jacinto, V., Escobar-Zepeda, A., Godoy, E., Vega-Alvarado, L., Verleyen, J., Estrada, K., Sanchez-Flores, A.. El metagenoma del taco.
Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM,
8,
29-32.
Artículo
57 - Gonzalez,G., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Olvera,M., Morett,E., Juarez,K.. Global transcriptional start site mapping in Geobacter sulfurreducens during growth with two different electron acceptors.
Fems Microbiology Letters,
363 (17),
fnw175.
Nacional
58 - Gonzalez,G., Labastida,A., Jimenez,V., Vega,L., Olvera,M., Morett,E., Juarez,K.. Genes involved in electron transfer mechanism in g. Sulfurreducens. Environmental Biotechnology and Engineering-2014.
1269-1276,
3,
Mexico D.F..
Artículo
59 - Salgado,H., Peralta-Gil,M., Gama-Castro,S., Santos-Zavaleta,A., Muniz-Rascado,L., Garcia-Sotelo,J.S., Weiss,V., Solano-Lira,H., Martinez-Flores,I., Medina-Rivera,A., Salgado-Osorio,G., Alquicira-Hernandez,S., Alquicira-Hernandez,K., Lopez-Fuentes,A., Porron-Sotelo,L., Huerta,A.M., Bonavides-Martinez,C., Balderas-Martinez,Y.I., Pannier,L., Olvera,M., Labastida,A., Jimenez-Jacinto,V., Vega-Alvarado,L., Del Moral-Chavez,V., Hernandez-Alvarez,A., Morett,E., Collado-Vides,J.. RegulonDB v8.0: omics data sets, evolutionary conservation, regulatory phrases, cross-validated gold standards and more.
Nucleic Acids Research,
41 (D1),
D203-D213.
Artículo
60 - Gama-Castro,S., Salgado,H., Peralta-Gil,M., Santos-Zavaleta,A., Muniz-Rascado,L., Solano-Lira,H., Jimenez-Jacinto,V., Weiss,V., Garcia-Sotelo,J.S., Lopez-Fuentes,A., Porron-Sotelo,L., Alquicira-Hernandez,S., Medina-Rivera,A., Martinez-Flores,I., Alquicira-Hernandez,K., Martinez-Adame,R., Bonavides-Martinez,C., Miranda-Rios,J., Huerta,A.M., Mendoza-Vargas,A., Collado-Torres,L., Taboada,B., Vega-Alvarado,L., Olvera,M., Olvera,L., Grande,R., Morett,E., Collado-Vides,J.. RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units).
Nucleic Acids Research,
39 (Suppl 1),
D98-D105.
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61 - Demir,E., Cary,M.P., Paley,S., Fukuda,K., Lemer,C., Vastrik,I., Wu,G., D'Eustachio,P., Schaefer,C., Luciano,J., Schacherer,F., Martinez-Flores,I., Hu,Z., Jimenez-Jacinto,V., Joshi-Tope,G., Kandasamy,K., Lopez-Fuentes,A.C., Mi,H., Pichler,E., Rodchenkov,I., Splendiani,A., Tkachev,S., Zucker,J., Gopinath,G., Rajasimha,H., Ramakrishnan,R., Shah,I., Syed,M., Anwar,N., Babur,O., Blinov,M., Brauner,E., Corwin,D., Donaldson,S., Gibbons,F., Goldberg,R., Hornbeck,P., Luna,A., Murray-Rust,P., Neumann,E., Reubenacker,O., Samwald,M., van Iersel,M., Wimalaratne,S., Allen,K., Braun,B., Whirl-Carrillo,M., Cheung,K.H., Dahlquist,K., Finney,A., Gillespie,M., Glass,E., Gong,L., Haw,R., Honig,M., Hubaut,O., Kane,D., Krupa,S., Kutmon,M., Leonard,J., Marks,D., Merberg,D., Petri,V., Pico,A., Ravenscroft,D., Ren,L., Shah,N., Sunshine,M., Tang,R., Whaley,R., Letovksy,S., Buetow,K.H., Rzhetsky,A., Schachter,V., Sobral,B.S., Dogrusoz,U., McWeeney,S., Aladjem,M., Birney,E., Collado-Vides,J., Goto,S., Hucka,M., Le Novere,N., Maltsev,N., Pandey,A., Thomas,P., Wingender,E., Karp,P.D., Sander,C., Bader,G.D.. The BioPAX community standard for pathway data sharing.
Nature Biotechnology,
28 (9),
935-942 (corrigendum vol 30 p 365 2012).
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62 - Martinez-Flores,I., Jimenez-Jacinto,V., Lopez-Fuentes,A., Collado-Vides,J.. Expanding BioPAX format by integrating Gene Regulation.
EMBnet.journal,
16 (1),
39-43.
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Revisión
63 - Collado-Vides,J., Salgado,H., Morett,E., Gama-Castro,S., Jimenez-Jacinto,V., Martinez-Flores,I., Medina-Rivera,A., Muniz-Rascado,L., Peralta-Gil,M., Santos-Zavaleta,A.. Bioinformatics resources for the study of gene regulation in bacteria.
Journal of Bacteriology,
191 (1),
23-31.
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64 - Mendoza-Vargas,A., Olvera,L., Olvera,M., Grande,R., Vega-Alvarado,L., Taboada,B., Jimenez-Jacinto,V., Salgado,H., Juarez,K., Contreras-Moreira,B., Huerta,A.M., Collado-Vides,J., Morett,E.. Genome-Wide Identification of Transcription Start Sites, Promoters and Transcription Factor Binding Sites in E. coli.
PLoS ONE,
4 (10),
e7526.
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65 - Gama-Castro,S., Jimenez-Jacinto,V., Peralta-Gil,M., Santos-Zavaleta,A., Penaloza-Spinola,M.I., Contreras-Moreira,B., Segura-Salazar,J., Muniz-Rascado,L., Martinez-Flores,I., Salgado,H., Bonavides-Martinez,C., Abreu-Goodger,C., Rodriguez-Penagos,C., Miranda-Rios,J., Morett,E., Merino,E., Huerta,A.M., Trevino-Quintanilla,L., Collado-Vides,J.. RegulonDB (version 6.0): gene regulation model of Escherichia coli K-12 beyond transcription, active (experimental) annotated promoters and Textpresso navigation.
Nucleic Acids Research,
36 (Database issue),
D120-D124.
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66 - Gonzalez, V., Santamaria, R. I., Bustos, P., Hernandez-Gonzalez, I., Medrano-Soto, A., Moreno-Hagelsieb, G., Janga, S. C., Ramirez, M. A., Jimenez-Jacinto, V., Collado-Vides, J., Davila, G.. The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons.
Proceedings of the National Academy of Sciences of the United States of America,
103 (10),
3834-3839.
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Artículo
67 - Martinez-Antonio,A., Salgado,H., Gama-Castro,S., Gutierrez-Rios,R.M., Jimenez-Jacinto,V., Collado-Vides,J.. Environmental conditions and transcriptional regulation in Escherichia coli: A physiological integrative approach.
Biotechnology and Bioengineering,
84 (7),
743-749.
*
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