Bioinformática
Biología Molecular, Bioquímica y Fisiología de Bacterias
Estudios genómicos, bioquímicos de la interacción de la microbiota con distintos hospederos
Número de registros: 6
  • Activos
  • Vencidos
  • Descifrando la dinámica del genoma accesorio en el microbioma y su impacto en la salud del camarón cultivado en méxico, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2020 - 2023
  • Manipulación del microbioma del camarón como una solución para enfermedades que afectan la producción nacional., DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2020 - 2022
  • Seguimiento multianual de la dinámica del microbioma del camarón y su entorno en un sistema de producción acuícola, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2018 - 2020
  • Estudio de la dinámica del microbioma asociado al cultivo de dos cepas de camarón y su entorno a través del tiempo, DIRECCIÓN GENERAL DE ASUNTOS DEL PERSONAL ACADÉMICO/UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO, 2016 - 2018
  • Análisis del metatranscriptoma intestinal en personas sanas y obesas de población mexicana infecciosas, CONSEJO NACIONAL DE CIENCIA Y TECNOLOGÍA, 2015 - 2018
  • Estudios de metagenomas y metatranscriptomas asociados a enfermedades infecciosas, PRESUPUESTO UNAM, 2015 - 2020

Nivel II del SNI
  • Doctorado, Ciencias Bioquímicas, Instituto de Biotecnología-UNAM (2011)

  • Maestría, Ciencias Bioquímicas, Instituto de Biotecnología-UNAM (2007)

  • Licenciatura, Licenciatura: Biólogo Experimental, Universidad Autónoma de Sinaloa (2005)

  • Premio Carlos Casas Campillo 2018, SMBB, 2018

  • Doctorado
  • Licenciatura
  • Maestría.
7 - Rosas Muñoz, Isabel (2018). Análisis del microbioma de hepatopáncreas de camarones en cultivo (penaeus vannamei) sanos y enfermos . Centro Universitario de Ciencias Biológicas y Agropecuarias, Licenciado en Biología, Universidad de Guadalajara. *
8 - Gallardo Becerra, Luigui Michel (2018). Análisis de la microbiota relacionada con el camarón blanco (litopenaeus vannamei) : intestino. Centro Universitario de Ciencias Biológicos y Agropecuarias, Licenciado en Biología, Universidad de Guadalajara. *
Total de publicaciones: 67
  • Tipo
  • Fecha
Open Access Artículo
10 - Arrieta,O., Molina-Romero,C., Cornejo-Granados,F., Marquina-Castillo,B., Aviles-Salas,A., Lopez-Leal,G., Cardona,A.F., Ortega-Gomez,A., Orozco-Morales,M., Ochoa-Leyva,A., Hernandez-Pando,R. (2022). Clinical and pathological characteristics associated with the presence of the IS6110 Mycobacterim tuberculosis transposon in neoplastic cells from non-small cell lung cancer patients. Scientific Reports, 12 (1), 2210.
Artículo
12 - Brassea-Estardante,H.A., Martinez-Cruz,O., Cardenas-Lopez,J.L., Garcia-Orozco,K.D., Ochoa-Leyva,A., Lopez-Zavala,A.A. (2022). Identification of arginine kinase as an allergen of brown crab, Callinectes bellicosus, and in silico analysis of IgE-binding epitopes. Molecular Immunology, 143, 147-156.
Open Access Articulo
13 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Mata-Espinosa,D.A., Bini,E.I., Barrios-Payan,J., Zatarain-Barron,Z.L., Anzola,J.M., Cornejo-Granados,F., Ochoa-Leyva,A., del Portillo,P., Murcia,M.I., Hernandez-Pando,R. (2022). Close Related Drug-Resistance Beijing Isolates of Mycobacterium tuberculosis Reveal a Different Transcriptomic Signature in a Murine Disease Progression Model. International Journal of Molecular Sciences, 23 (9), 5157.
Artículo
14 - Medina-Salazar,S.A., Cornejo-Granados,F., Equihua-Medina,E., Ochoa-Leyva,A., Vallejo-Perez,M.R., Vega-Manriquez,D.X., Jarquin-Galvez,R., Castro-Rivera,R., Aguilar-Benitez,G., Lara-Avila,J.P. (2022). Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior. World Journal Of Microbiology & Biotechnology, 38 (3), 49.
Open Access Artículo
15 - Murga-Garrido,S.M., Orbe-Orihuela,Y.C., Diaz-Benitez,C.E., Castaneda-Marquez,A.C., Cornejo-Granados,F., Ochoa-Leyva,A., Sanchez-Flores,A., Cruz,M., Burguete-Garcia,A.I., Lagunas-Martinez,A. (2022). Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity. Children, 9 (2), 148.
Open Access Artículo
16 - Ochoa-Romo,J.P., Cornejo-Granados,F., Lopez-Zavala,A.A., Viana,M.T., Sanchez,F., Gallardo-Becerra,L., Luque-Villegas,M., Valdez-Lopez,Y., Sotelo-Mundo,R.R., Cota-Huizar,A., Lopez-Munguia,A., Ochoa-Leyva,A. (2022). Agavin induces beneficial microbes in the shrimp microbiota under farming conditions. Scientific Reports, 12 (1), 6392.
Artículo
17 - Orbe-Orihuela,Y.C., Godoy-Lozano,E.E., Lagunas-Martinez,A, Castaneda-Marquez,A.C, Murga-Garrido,S, Diaz-Benitez,C.E, Ochoa-Leyva,A., Cornejo-Granados,F, Cruz,M, Estrada,K, Bermudez-Morales,V.H., Sanchez-Flores,A., Burguete-Garcia,A.I (2022). Association of Gut Microbiota with Dietary-dependent Childhood Obesity. Archives of Medical Research, 53 (4), 407-415.
Artículo
18 - Vazquez-Velez,E., Martinez,H., Kumar Kesarla,M., Ochoa-Leyva,A. (2022). Studies on the effect of long-chain and head groups of nonionic surfactants synthesized from palm and coconut oil on the formation of silver nanoparticles. Journal of Surfactants and Detergents, 25 (3), 413-426.
Open Access Artículo
20 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Lopez-Leal,G., Mata-Espinosa,D.A., Bini,E.I., Marquina-Castillo,B.N., Barrios-Payan,J., Zatarain-Barron,Z.L., Bobadilla del Valle,M., Cornejo-Granados,F., Ochoa-Leyva,A., Murcia,M.I., Hernandez-Pando,R. (2021). Profiling the immune response to Mycobacterium tuberculosis Beijing family infection: a perspective from the transcriptome. Virulence, 12 (1), 1689-1704.
Open Access Artículo
21 - Cornejo-Granados,F., Kohl,T.A., Sotomayor,F.V., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A. (2021). Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences. BMC Genomics, 22 (1), 385.
Open Access Artículo
22 - Cornejo-Granados,F., Lopez-Leal,G., Mata-Espinosa,D.A., Barrios-Payan,J., Marquina-Castillo,B., Equihua-Medina,E., Zatarain-Barron,Z.L., Molina-Romero,C., Hernandez-Pando,R., Ochoa-Leyva,A. (2021). Targeted rna-seq reveals the m. Tuberculosis transcriptome from an in vivo infection model. Biology, 10 (9), 848.
Open Access Artículo
23 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Cota-Huizar,A., Sotelo-Mundo,R.R., Gomez-Gil,B., Ochoa-Leyva,A. (2021). OTUs and ASVs Produce Comparable Taxonomic and Diversity from Shrimp Microbiota 16S Profiles Using Tailored Abundance Filters. Genes (Basel), 12 (4), 564.
Open Access Artículo
24 - Gomez-Fuentes,S., Hernandez-de la Fuente,S., Morales-Ruiz,V., Lopez-Recinos,D., Guevara-Salinas,A., Parada-Colin,M.C., Espitia,C., Ochoa-Leyva,A., Sanchez,F., Villalobos,N., Arce-Sillas,A., Hernandez,M., Mora,S.I., Fragoso,G., Sciutto,E., Adalid-Peralta,L. (2021). A novel, sequencing-free strategy for the functional characterization of Taenia solium proteomic fingerprint. PLoS Neglected Tropical Diseases, 15 (2), e0009104.
Open Access Artículo
25 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K. (2021). PmAP2- B depletion enhanced activation of the Toll signaling pathway during yellow head virus infection in the black tiger shrimp Penaeus monodon. Scientific Reports, 11 (1), 10534.
Open Access Artículo
26 - Valenzuela-Chavira,I., Corona-Martinez,D.O., Garcia-Orozco,K.D., Beltran-Torres,M., Sanchez-Lopez,F., Arvizu-Flores,A.A., Sugich-Miranda,R., Lopez-Zavala,A.A., Robles-Zepeda,R.E., Islas-Osuna,M.A., Ochoa-Leyva,A., Toney,M.D., Serrano-Posada,H., Sotelo-Mundo,R.R. (2021). A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen. Toxins, 13 (9), 664.
Open Access Artículo
27 - Vazquez-Morado,L.E., Robles-Zepeda,R.E., Ochoa-Leyva,A., Arvizu-Flores,A.A., Garibay-Escobar,A., Castillo-Yanez,F., Lopez-Zavala,A.A. (2021). Biochemical characterization and inhibition of thermolabile hemolysin from Vibrio parahaemolyticus by phenolic compounds. PeerJ, 9.
Open Access Artículo
28 - Calderon de la Barca A.M, Castillo-Fimbres,R.S., Mejia-Leon,M.E., Quihui-Cota,L., Ochoa-Leyva,A., Aguayo-Patron,S.V. (2020). Enteric parasitic infection disturbs bacterial structure in Mexican children with autoantibodies for type 1 diabetes and/or celiac disease. Gut Pathogens, 12, 37, 37.
Artículo
29 - Fuentes-Quesada,J.P., Cornejo-Granados,F., Mata-Sotres,J.A., Ochoa-Romo,J.P., Rombenso,A.N., Guerrero-Renteria,Y., Lazo,J.P., Pohlenz,C., Ochoa-Leyva,A., Viana,M.T. (2020). Prebiotic agavin in juvenile totoaba, Totoaba macdonaldi diets, to relieve soybean meal-induced enteritis: Growth performance, gut histology and microbiota. Aquaculture Nutrition, 26 (6), 2115-2134.
Open Access Artículo
31 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A. (2020). Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota. Microorganisms, 8 (1).
Open Access Artículo
32 - Zatarain-Barron,Z.L., Ramos-Espinosa,O., Marquina-Castillo,B., Barrios-Payan,J., Cornejo-Granados,F., Maya-Lucas,O., Lopez-Leal,G., Molina-Romero,C., Anthony,R.M., Ochoa-Leyva,A., De La Rosa-Velazquez IA, Rebollar-Vega,R.G., Warren,R.M., Mata-Espinosa,D.A., Hernandez-Pando,R., van,Soolingen D. (2020). Evidence for the Effect of Vaccination on Host-Pathogen Interactions in a Murine Model of Pulmonary Tuberculosis by Mycobacterium tuberculosis. Frontiers in Immunology, 11, 930.
Open Access Artículo
33 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G. (2019). Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico. Frontiers in Microbiology, 10, 531 [Publicado anteriormente en repositorio bioRxiv].
Open Access Artículo
35 - Dautt-Castro,M., Lopez-Virgen,A.G., Ochoa-Leyva,A., Contreras-Vergara,C.A., Sortillon-Sortillon,A.P., Martinez-Tellez,M.A., Gonzalez-Aguilar,G.A., Casas-Flores,J.S., Sanudo-Barajas,A., Kuhn,D.N., Islas-Osuna,M.A. (2019). Genome-Wide Identification of Mango (Mangifera indica L.) Polygalacturonases: Expression Analysis of Family Members and Total Enzyme Activity During Fruit Ripening. Frontiers in Plant Science, 10, 969.
Open Access Artículo
36 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K. (2019). Role of Clathrin Assembly Protein-2 Beta Subunit during White Spot Syndrome Virus Infection in Black Tiger Shrimp Penaeus monodon. Scientific Reports, 9 (1), 13489.
Open Access Artículo
37 - Ruiz-Zamora,R.A., Guillaume,S., Al-Hilaly,Y.K., Al-Garawi,Z., Rodriguez-Alvarez,F.J., Zavala-Padilla,G., Perez-Carreon,J.I., Rodriguez-Ambriz,S.L., Herrera,G.A., Becerril-Lujan,B., Ochoa-Leyva,A., Melendez-Zajgla,J., Serpell,L., Del Pozo-Yauner,L. (2019). The CDR1 and Other Regions of Immunoglobulin Light Chains are Hot Spots for Amyloid Aggregation. Scientific Reports, 9 (1), 3123.
Open Access Artículo
38 - Castro-Torres,E., Jimenez-Sandoval,P., Fernandez-de,Gortari E., Lopez-Castillo,M., Baruch-Torres,N., Lopez-Hidalgo,M., Peralta-Castro,A., Diaz-Quezada,C., Sotelo-Mundo,R.R., Benitez-Cardoza,C.G., Espinoza-Fonseca,L.M., Ochoa-Leyva,A., Brieba,L.G. (2018). Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis. Frontiers in Molecular Biosciences, 5, 103.
Open Access Artículo
39 - Cervantes-Echeverria,M., Equihua-Medina,E., Cornejo-Granados,F., Hernandez-Reyna,A., Sanchez,F., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A. (2018). Whole-genome of Mexican-crAssphage isolated from the human gut microbiome. BMC Research Notes, 11 (1), 902.
Artículo
41 - Dautt-Castro, M., Ochoa-Leyva, A., Contreras-Vergara, C.A., Muhlia-Almazan, A., Rivera-Dominguez, M., Casas-Flores, S., Martinez-Tellez, M.A., Sanudo-Barajas, A., Osuna-Enciso, T., Baez-Sanudo, M.A., Quiroz-Figueroa, F.R., Kuhn, D.N., Islas-Osuna, M.A. (2018). Mesocarp RNA-Seq analysis of mango (Mangifera indica L.) identify quarantine postharvest treatment effects on gene expression. Scientia Horticulturae, 227, 146-153.
Artículo
42 - Garcia, C.F., Pedrini, N., Sanchez-Paz, A., Reyna-Blanco, C.S., Lavarias, S., Muhlia-Almazan, A., Fernandez-Gimenez, A., Laino, A., de-la-Re-Vega, E., Lukaszewicz, G., Lopez-Zavala, A.A., Brieba, L.G., Criscitello, M.F., Carrasco-Miranda, J.S., Garcia-Orozco, K.D., Ochoa-Leyva, A., Rudino-Pinera, E., Sanchez-Flores, A., Sotelo-Mundo, R.R. (2018). De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response. Marine Genomics, 37, 74-81.
Artículo
43 - Gonzalez-Felix, M.L., Gatlin, D.M., Urquidez-Bejarano, P., de la Ree-Rodriguez, C., Duarte-Rodriguez, L., Sanchez, F., Casas-Reyes, A., Yamamoto, F.Y., Ochoa-Leyva, A., Perez-Velazquez, M. (2018). Effects of commercial dietary prebiotic and probiotic supplements on growth, innate immune responses, and intestinal microbiota and histology of Totoaba macdonaldi. Aquaculture, 491, 239-251.
Artículo
44 - Lopez-Contreras, B.E., Moran-Ramos, S., Villarruel-Vazquez, R., Macias-Kauffer, L., Villamil-Ramirez, H., Leon-Mimila, P., Vega-Badillo, J., Sanchez-Munoz, F., Llanos-Moreno, L.E., Canizalez-Roman, A., del Rio-Navarro, B., Ibarra-Gonzalez, I., Vela-Amieva, M., Villarreal-Molina, T., Ochoa-Leyva, A., Aguilar-Salinas, C.A., Canizales-Quinteros, S. (2018). Composition of gut microbiota in obese and normal-weight Mexican school-age children and its association with metabolic traits. Pediatric Obesity, 13 (6), 381-388.
Open Access Artículo
46 - Lopez-Zavala, A.A., Guevara-Hernandez, E., Vazquez-Lujan, L.H., Sanchez-Paz, A., Garcia-Orozco, K.D., Contreras-Vergara, C.A., Lopez-Leal, G., Arvizu-Flores, A.A., Ochoa-Leyva, A., Sotelo-Mundo, R.R. (2018). A novel thymidylate synthase from the Vibrionales, Alteromonadales, Aeromonadales, and Pasteurellales (VAAP) clade with altered nucleotide and folate binding sites. PeerJ, 6, e5023.
Open Access Artículo
47 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A. (2017). A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data. PeerJ, 5, e4133.
Artículo
48 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E. (2017). Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen. Infection and Immunity, 85, e00395-17.
Open Access Artículo
49 - Cornejo-Granados, F., Zatarain-Barron, Z.L., Cantu-Robles, V.A., Mendoza-Vargas, A., Molina-Romero, C., Sanchez, F., Del Pozo-Yauner, L., Hernandez-Pando, R., Ochoa-Leyva, A. (2017). Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets. Frontiers in Microbiology, 8, 128.
Open Access Artículo
50 - Cornejo-Granados, F., Lopez-Zavala, A.A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sanchez, F., Vichido, R., Brieba, L.G., Viana, M.T., Sotelo-Mundo, R.R., Ochoa-Leyva, A. (2017). Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions. Scientific Reports, 7 (1), 11783.
Open Access Artículo
51 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X. (2017). Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
Artículo
52 - Lopez-Zavala,A.A., Carrasco-Miranda,J.S., Ramirez-Aguirre,C.D., Lopez-Hidalgo,M., Benitez-Cardoza,C.G., Ochoa-Leyva,A., Cardona-Felix,C.S., Diaz-Quezada,C., Rudino-Pinera,E., Sotelo-Mundo,R.R., Brieba,L.G. (2016). Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei. Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1864 (12), 1696-1706.
Open Access Revisión
Open Access Artículo
54 - Dautt-Castro,M., Ochoa-Leyva,A., Contreras-Vergara,C.A., Pacheco-Sanchez,M.A., Casas-Flores,S., Sanchez-Flores,A., Kuhn,D.N., Islas-Osuna,M.A. (2015). Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening. Frontiers in Plant Science, 6.
Open Access Artículo
55 - Gomez,S., Adalid-Peralta,L., Palafox-Fonseca,H., Cantu-Robles,V.A., Soberon,X., Sciutto,E., Fragoso,G., Bobes,R.J., Laclette,J.P., Yauner,L.D., Ochoa-Leyva,A. (2015). Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR). Scientific Reports, 5, 9683 [erratum en vol 5 (12385) ].
Artículo
56 - Del Pozo-Yauner,L., Wall,J.S., Gonzalez-Andrade,M., Sanchez-Lopez,R., Rodriguez-Ambriz,S.L., Perez-Carreon,J.I., Ochoa-Leyva,A., Fernandez-Velasco,D.A. (2014). The N-terminal strand modulates immunoglobulin light chain fibrillogenesis. Biochemical and Biophysical Research Communications, 443 (2), 495-499.
Open Access Artículo
57 - Ghaffari,N., Sanchez-Flores,A., Doan,R., Garcia-Orozco,K.D., Chen,P.L., Ochoa-Leyva,A., Lopez-Zavala,A.A., Carrasco,J.S., Hong,C., Brieba,L.G., Rudino-Pinera,E., Blood,P.D., Sawyer,J.E., Johnson,C.D., Dindot,S.V., Sotelo-Mundo,R.R., Criscitiello,M.F. (2014). Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture. Scientific Reports, 4, 7081.
Open Access Artículo
58 - Gomez-Jimenez,S., Noriega-Orozco,L., Sotelo-Mundo,R.R., Cantu-Robles,V.A., Cobian-Guemes,A.G., Cota-Verdugo,R.G., Gamez-Alejo,L.A., Del Pozo-Yauner,L., Guevara-Hernandez,E., Garcia-Orozco,K.D., Lopez-Zavala,A.A., Ochoa-Leyva,A. (2014). High-Quality Draft Genomes of Two Vibrio parahaemolyticus Strains Aid in Understanding Acute Hepatopancreatic Necrosis Disease of Cultured Shrimps in Mexico. Genome Announcements, 2 (4). *
Artículo
59 - Lara-Gonzalez,S., Estrella-Hernandez,P., Ochoa-Leyva,A., Portillo-Tellez,M.C., Caro-Gomez,L.A., Figueroa-Angulo,E.E., Salgado-Lugo,H., Miranda-Ozuna,J.F., Ortega-Lopez,J., Arroyo,R., Brieba,L.G., Benitez-Cardoza,C.G. (2014). Structural and thermodynamic folding characterization of triosephosphate isomerases from Trichomonas vaginalis reveals the role of destabilizing mutations following gene duplication. Proteins: Structure, Function and Bioinformatics, 82 (1), 22-33. *
Artículo
61 - Tsai,I.J., Zarowiecki,M., Holroyd,N., Garciarrubio,A., Sanchez-Flores,A., Brooks,K.L., Tracey,A., Bobes,R.J., Fragoso,G., Sciutto,E., Aslett,M., Beasley,H., Bennett,H.M., Cai,Jianping, Camicia,F., Clark,R., Cucher,M., De Silva,N., Day,T.A., Deplazes,P., Estrada,K., Fernandez,C., Holland,P.W.H., Hou,Junling, Hu,Songnian, Huckvale,Thomas, Hung,S.S., Kamenetzky,L., Keane,J.A., Kiss,F., Koziol,U., Lambert,O., Liu,K., Luo,Xuenong, Luo,Yingfeng, Macchiaroli,N., Nichol,S., Paps,Jordi, Parkinson,J., Pouchkina-Stantcheva,N., Riddiford,N., Rosenzvit,M., Salinas,G., Wasmuth,James D., Zamanian,M., Zheng,Yadong, Cai,Xuepeng, Soberon,X., Olson,P.D., Laclette,J.P., Brehm,Klaus, Berriman,M., Ochoa-Leyva,A. (2013). The genomes of four tapeworm species reveal adaptations to parasitism. Nature, 496 (7443), 57-63.
Artículo
62 - Figueroa-Angulo,E.E., Estrella-Hernandez,P., Salgado-Lugo,H., Ochoa-Leyva,A., Gomez-Puyou,A., Campos,S.S., Montero-Moran,G., Ortega-Lopez,J., Saab-Rincon,G., Arroyo,R., Benitez-Cardoza,C.G., Brieba,L.G. (2012). Cellular and biochemical characterization of two closely related triosephosphate isomerases from Trichomonas vaginalis. Parasitology, 139 (13), 1729-1738.
Artículo
Artículo
65 - Wright,H., Noda-Garcia,L., Ochoa-Leyva,A., Hodgson,D.A., Fulop,V., Barona-Gomez,F. (2008). The structure/function relationship of a dual-substrate (betaalpha)(8)-isomerase. Biochemical and Biophysical Research Communications, 365 (1), 16-21.
Internacional
66 - Pozo-Yauner,L., Becerril,B., Ochoa-Leyva,A., Rodriguez-Ambriz,S.L., Perez-Carrion,J.I., Zavala-Padilla,G., Sanchez-Lopez,R., Fernandez-Velasco,D.A. (2015). The Structural Determinants of the Immunoglobulin Light Chain Amyloid Aggregation. Physical Biology of Proteins and Peptides: Theory, Experiment, and Simulation. 1-28, Cham.
Internacional
67 - Barona-Gomez,F., Ochoa-Leyva,A., Soberon,X. (2007). Advances and perspectives in protein engineering: from natural history to directed evolution of enzymes. Advances in Protein Physical Chemistry. 407-438, Kerala: Research Signpost.
Open Access Preprint
69 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A. (2020). Gut Phageome Analysis Reveals Disease-Specific Hallmarks in Childhood Obesity. bioRxiv, Preprint posted July 30.
Open Access Preprint
70 - Cornejo-Granados,F., Kohl,T.A., Vasquez-Sotomayor,F., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A. (2020). In silico secretome characterization of clinical Mycobacterium abscessus isolates provides insights into antigenic differences. bioRxiv, Preprint posted October 22, 2020.
Editorial Material, Meeting Report
71 - Cornejo-Granados,F., Calderon de la Barca AM, Torres,N., Martinez-Romero,E., Torres,J., Lopez-Vidal,Y., Soberon,X., Partida-Martinez,L.P., Pinto-Cardoso,S., Alcaraz,L.D., Pardo-Lopez,L., Canizales-Quinteros,S., Puente,J.L., Ochoa-Leyva,A. (2019). Microbiome-MX 2018: Microbiota and Microbiome opportunities in Mexico, a megadiverse country. Research in Microbiology, 170 (4-5), 235-241.
Open Access data publication
72 - Fox-Uribe,L.Y., Hernandez-Paredes,J., Soberanes,Y., Valenzuela-Chavira,I., Garcia-Orozco,K.D., Ochoa-Leyva,A., Ochoa-Lara,K., Navarro,R.E., Sotelo-Mundo,R.R. (2019). d-Glutamic acid hydrochloride. IUCrData, 4 (4), x190458.
Open Access Preprint
73 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G. (2018). Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico. bioRxiv, preprint posted November 29, 2018.
Open Access Divulgación
74 - Bikel, S., Ochoa-Leyva, A. (2018). La microbiota humana, un mundo microscópico apasionante de explorar. Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM, 13, 30-32.
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77 - Arrieta,O., Molina-Romero,C., Cornejo-Granados,F., Marquina-Castillo,B., Aviles-Salas,A., Lopez-Leal,G., Cardona,A.F., Ortega-Gomez,A., Orozco-Morales,M., Ochoa-Leyva,A., Hernandez-Pando,R.. Clinical and pathological characteristics associated with the presence of the IS6110 Mycobacterim tuberculosis transposon in neoplastic cells from non-small cell lung cancer patients. Scientific Reports, 12 (1), 2210.
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79 - Brassea-Estardante,H.A., Martinez-Cruz,O., Cardenas-Lopez,J.L., Garcia-Orozco,K.D., Ochoa-Leyva,A., Lopez-Zavala,A.A.. Identification of arginine kinase as an allergen of brown crab, Callinectes bellicosus, and in silico analysis of IgE-binding epitopes. Molecular Immunology, 143, 147-156.
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80 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Mata-Espinosa,D.A., Bini,E.I., Barrios-Payan,J., Zatarain-Barron,Z.L., Anzola,J.M., Cornejo-Granados,F., Ochoa-Leyva,A., del Portillo,P., Murcia,M.I., Hernandez-Pando,R.. Close Related Drug-Resistance Beijing Isolates of Mycobacterium tuberculosis Reveal a Different Transcriptomic Signature in a Murine Disease Progression Model. International Journal of Molecular Sciences, 23 (9), 5157.
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81 - Medina-Salazar,S.A., Cornejo-Granados,F., Equihua-Medina,E., Ochoa-Leyva,A., Vallejo-Perez,M.R., Vega-Manriquez,D.X., Jarquin-Galvez,R., Castro-Rivera,R., Aguilar-Benitez,G., Lara-Avila,J.P.. Genome analysis of Pseudomonas sp. 14A reveals metabolic capabilities to support epiphytic behavior. World Journal Of Microbiology & Biotechnology, 38 (3), 49.
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82 - Murga-Garrido,S.M., Orbe-Orihuela,Y.C., Diaz-Benitez,C.E., Castaneda-Marquez,A.C., Cornejo-Granados,F., Ochoa-Leyva,A., Sanchez-Flores,A., Cruz,M., Burguete-Garcia,A.I., Lagunas-Martinez,A.. Alterations of the Gut Microbiome Associated to Methane Metabolism in Mexican Children with Obesity. Children, 9 (2), 148.
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83 - Ochoa-Romo,J.P., Cornejo-Granados,F., Lopez-Zavala,A.A., Viana,M.T., Sanchez,F., Gallardo-Becerra,L., Luque-Villegas,M., Valdez-Lopez,Y., Sotelo-Mundo,R.R., Cota-Huizar,A., Lopez-Munguia,A., Ochoa-Leyva,A.. Agavin induces beneficial microbes in the shrimp microbiota under farming conditions. Scientific Reports, 12 (1), 6392.
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84 - Orbe-Orihuela,Y.C., Godoy-Lozano,E.E., Lagunas-Martinez,A, Castaneda-Marquez,A.C, Murga-Garrido,S, Diaz-Benitez,C.E, Ochoa-Leyva,A., Cornejo-Granados,F, Cruz,M, Estrada,K, Bermudez-Morales,V.H., Sanchez-Flores,A., Burguete-Garcia,A.I. Association of Gut Microbiota with Dietary-dependent Childhood Obesity. Archives of Medical Research, 53 (4), 407-415.
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85 - Vazquez-Velez,E., Martinez,H., Kumar Kesarla,M., Ochoa-Leyva,A.. Studies on the effect of long-chain and head groups of nonionic surfactants synthesized from palm and coconut oil on the formation of silver nanoparticles. Journal of Surfactants and Detergents, 25 (3), 413-426.
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Open Access Artículo
88 - Cerezo-Cortes,M.I., Rodriguez-Castillo,J.G., Lopez-Leal,G., Mata-Espinosa,D.A., Bini,E.I., Marquina-Castillo,B.N., Barrios-Payan,J., Zatarain-Barron,Z.L., Bobadilla del Valle,M., Cornejo-Granados,F., Ochoa-Leyva,A., Murcia,M.I., Hernandez-Pando,R.. Profiling the immune response to Mycobacterium tuberculosis Beijing family infection: a perspective from the transcriptome. Virulence, 12 (1), 1689-1704.
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89 - Cornejo-Granados,F., Kohl,T.A., Sotomayor,F.V., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A.. Secretome characterization of clinical isolates from the Mycobacterium abscessus complex provides insight into antigenic differences. BMC Genomics, 22 (1), 385.
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90 - Cornejo-Granados,F., Lopez-Leal,G., Mata-Espinosa,D.A., Barrios-Payan,J., Marquina-Castillo,B., Equihua-Medina,E., Zatarain-Barron,Z.L., Molina-Romero,C., Hernandez-Pando,R., Ochoa-Leyva,A.. Targeted rna-seq reveals the m. Tuberculosis transcriptome from an in vivo infection model. Biology, 10 (9), 848.
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Open Access Artículo
92 - Gomez-Fuentes,S., Hernandez-de la Fuente,S., Morales-Ruiz,V., Lopez-Recinos,D., Guevara-Salinas,A., Parada-Colin,M.C., Espitia,C., Ochoa-Leyva,A., Sanchez,F., Villalobos,N., Arce-Sillas,A., Hernandez,M., Mora,S.I., Fragoso,G., Sciutto,E., Adalid-Peralta,L.. A novel, sequencing-free strategy for the functional characterization of Taenia solium proteomic fingerprint. PLoS Neglected Tropical Diseases, 15 (2), e0009104.
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93 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K.. PmAP2- B depletion enhanced activation of the Toll signaling pathway during yellow head virus infection in the black tiger shrimp Penaeus monodon. Scientific Reports, 11 (1), 10534.
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94 - Valenzuela-Chavira,I., Corona-Martinez,D.O., Garcia-Orozco,K.D., Beltran-Torres,M., Sanchez-Lopez,F., Arvizu-Flores,A.A., Sugich-Miranda,R., Lopez-Zavala,A.A., Robles-Zepeda,R.E., Islas-Osuna,M.A., Ochoa-Leyva,A., Toney,M.D., Serrano-Posada,H., Sotelo-Mundo,R.R.. A Novel Glutathione S-Transferase Gtt2 Class (VpGSTT2) Is Found in the Genome of the AHPND/EMS Vibrio parahaemolyticus Shrimp Pathogen. Toxins, 13 (9), 664.
Open Access Artículo
95 - Vazquez-Morado,L.E., Robles-Zepeda,R.E., Ochoa-Leyva,A., Arvizu-Flores,A.A., Garibay-Escobar,A., Castillo-Yanez,F., Lopez-Zavala,A.A.. Biochemical characterization and inhibition of thermolabile hemolysin from Vibrio parahaemolyticus by phenolic compounds. PeerJ, 9.
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96 - Calderon de la Barca A.M, Castillo-Fimbres,R.S., Mejia-Leon,M.E., Quihui-Cota,L., Ochoa-Leyva,A., Aguayo-Patron,S.V.. Enteric parasitic infection disturbs bacterial structure in Mexican children with autoantibodies for type 1 diabetes and/or celiac disease. Gut Pathogens, 12, 37, 37.
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97 - Fuentes-Quesada,J.P., Cornejo-Granados,F., Mata-Sotres,J.A., Ochoa-Romo,J.P., Rombenso,A.N., Guerrero-Renteria,Y., Lazo,J.P., Pohlenz,C., Ochoa-Leyva,A., Viana,M.T.. Prebiotic agavin in juvenile totoaba, Totoaba macdonaldi diets, to relieve soybean meal-induced enteritis: Growth performance, gut histology and microbiota. Aquaculture Nutrition, 26 (6), 2115-2134.
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Open Access Artículo
99 - Garcia-Lopez,R., Cornejo-Granados,F., Lopez-Zavala,A.A., Sanchez-Lopez,F., Cota-Huizar,A., Sotelo-Mundo,R.R., Guerrero,A., Mendoza-Vargas,A., Gomez-Gil,B., Ochoa-Leyva,A.. Doing More with Less: A Comparison of 16S Hypervariable Regions in Search of Defining the Shrimp Microbiota. Microorganisms, 8 (1).
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100 - Zatarain-Barron,Z.L., Ramos-Espinosa,O., Marquina-Castillo,B., Barrios-Payan,J., Cornejo-Granados,F., Maya-Lucas,O., Lopez-Leal,G., Molina-Romero,C., Anthony,R.M., Ochoa-Leyva,A., De La Rosa-Velazquez IA, Rebollar-Vega,R.G., Warren,R.M., Mata-Espinosa,D.A., Hernandez-Pando,R., van,Soolingen D.. Evidence for the Effect of Vaccination on Host-Pathogen Interactions in a Murine Model of Pulmonary Tuberculosis by Mycobacterium tuberculosis. Frontiers in Immunology, 11, 930.
Open Access Preprint
101 - Bikel,S., Lopez-Leal,G., Cornejo-Granados,F., Gallardo-Becerra,L., Sanchez,F., Equihua-Medina,E., Ochoa-Romo,J.P., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A.. Gut Phageome Analysis Reveals Disease-Specific Hallmarks in Childhood Obesity. bioRxiv, Preprint posted July 30.
Open Access Preprint
102 - Cornejo-Granados,F., Kohl,T.A., Vasquez-Sotomayor,F., Andres,S., Hernandez-Pando,R., Hurtado-Ramirez,J.M., Utpatel,C., Niemann,S., Maurer,F.P., Ochoa-Leyva,A.. In silico secretome characterization of clinical Mycobacterium abscessus isolates provides insights into antigenic differences. bioRxiv, Preprint posted October 22, 2020.
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103 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G.. Bacterial Diversity and Population Dynamics During the Fermentation of Palm Wine From Guerrero Mexico. Frontiers in Microbiology, 10, 531 [Publicado anteriormente en repositorio bioRxiv].
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105 - Dautt-Castro,M., Lopez-Virgen,A.G., Ochoa-Leyva,A., Contreras-Vergara,C.A., Sortillon-Sortillon,A.P., Martinez-Tellez,M.A., Gonzalez-Aguilar,G.A., Casas-Flores,J.S., Sanudo-Barajas,A., Kuhn,D.N., Islas-Osuna,M.A.. Genome-Wide Identification of Mango (Mangifera indica L.) Polygalacturonases: Expression Analysis of Family Members and Total Enzyme Activity During Fruit Ripening. Frontiers in Plant Science, 10, 969.
Open Access Artículo
106 - Jatuyosporn,T., Laohawutthichai,P., Supungul,P., Sotelo-Mundo,R.R., Ochoa-Leyva,A., Tassanakajon,A., Krusong,K.. Role of Clathrin Assembly Protein-2 Beta Subunit during White Spot Syndrome Virus Infection in Black Tiger Shrimp Penaeus monodon. Scientific Reports, 9 (1), 13489.
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107 - Ruiz-Zamora,R.A., Guillaume,S., Al-Hilaly,Y.K., Al-Garawi,Z., Rodriguez-Alvarez,F.J., Zavala-Padilla,G., Perez-Carreon,J.I., Rodriguez-Ambriz,S.L., Herrera,G.A., Becerril-Lujan,B., Ochoa-Leyva,A., Melendez-Zajgla,J., Serpell,L., Del Pozo-Yauner,L.. The CDR1 and Other Regions of Immunoglobulin Light Chains are Hot Spots for Amyloid Aggregation. Scientific Reports, 9 (1), 3123.
Editorial Material, Meeting Report
108 - Cornejo-Granados,F., Calderon de la Barca AM, Torres,N., Martinez-Romero,E., Torres,J., Lopez-Vidal,Y., Soberon,X., Partida-Martinez,L.P., Pinto-Cardoso,S., Alcaraz,L.D., Pardo-Lopez,L., Canizales-Quinteros,S., Puente,J.L., Ochoa-Leyva,A.. Microbiome-MX 2018: Microbiota and Microbiome opportunities in Mexico, a megadiverse country. Research in Microbiology, 170 (4-5), 235-241.
Open Access data publication
109 - Fox-Uribe,L.Y., Hernandez-Paredes,J., Soberanes,Y., Valenzuela-Chavira,I., Garcia-Orozco,K.D., Ochoa-Leyva,A., Ochoa-Lara,K., Navarro,R.E., Sotelo-Mundo,R.R.. d-Glutamic acid hydrochloride. IUCrData, 4 (4), x190458.
Open Access Artículo
110 - Castro-Torres,E., Jimenez-Sandoval,P., Fernandez-de,Gortari E., Lopez-Castillo,M., Baruch-Torres,N., Lopez-Hidalgo,M., Peralta-Castro,A., Diaz-Quezada,C., Sotelo-Mundo,R.R., Benitez-Cardoza,C.G., Espinoza-Fonseca,L.M., Ochoa-Leyva,A., Brieba,L.G.. Structural Basis for the Limited Response to Oxidative and Thiol-Conjugating Agents by Triosephosphate Isomerase From the Photosynthetic Bacteria Synechocystis. Frontiers in Molecular Biosciences, 5, 103.
Open Access Artículo
111 - Cervantes-Echeverria,M., Equihua-Medina,E., Cornejo-Granados,F., Hernandez-Reyna,A., Sanchez,F., Lopez-Contreras,B.E., Canizales-Quinteros,S., Ochoa-Leyva,A.. Whole-genome of Mexican-crAssphage isolated from the human gut microbiome. BMC Research Notes, 11 (1), 902.
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113 - Dautt-Castro, M., Ochoa-Leyva, A., Contreras-Vergara, C.A., Muhlia-Almazan, A., Rivera-Dominguez, M., Casas-Flores, S., Martinez-Tellez, M.A., Sanudo-Barajas, A., Osuna-Enciso, T., Baez-Sanudo, M.A., Quiroz-Figueroa, F.R., Kuhn, D.N., Islas-Osuna, M.A.. Mesocarp RNA-Seq analysis of mango (Mangifera indica L.) identify quarantine postharvest treatment effects on gene expression. Scientia Horticulturae, 227, 146-153.
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114 - Garcia, C.F., Pedrini, N., Sanchez-Paz, A., Reyna-Blanco, C.S., Lavarias, S., Muhlia-Almazan, A., Fernandez-Gimenez, A., Laino, A., de-la-Re-Vega, E., Lukaszewicz, G., Lopez-Zavala, A.A., Brieba, L.G., Criscitello, M.F., Carrasco-Miranda, J.S., Garcia-Orozco, K.D., Ochoa-Leyva, A., Rudino-Pinera, E., Sanchez-Flores, A., Sotelo-Mundo, R.R.. De novo assembly and transcriptome characterization of the freshwater prawn Palaemonetes argentinus: Implications for a detoxification response. Marine Genomics, 37, 74-81.
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115 - Gonzalez-Felix, M.L., Gatlin, D.M., Urquidez-Bejarano, P., de la Ree-Rodriguez, C., Duarte-Rodriguez, L., Sanchez, F., Casas-Reyes, A., Yamamoto, F.Y., Ochoa-Leyva, A., Perez-Velazquez, M.. Effects of commercial dietary prebiotic and probiotic supplements on growth, innate immune responses, and intestinal microbiota and histology of Totoaba macdonaldi. Aquaculture, 491, 239-251.
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116 - Lopez-Contreras, B.E., Moran-Ramos, S., Villarruel-Vazquez, R., Macias-Kauffer, L., Villamil-Ramirez, H., Leon-Mimila, P., Vega-Badillo, J., Sanchez-Munoz, F., Llanos-Moreno, L.E., Canizalez-Roman, A., del Rio-Navarro, B., Ibarra-Gonzalez, I., Vela-Amieva, M., Villarreal-Molina, T., Ochoa-Leyva, A., Aguilar-Salinas, C.A., Canizales-Quinteros, S.. Composition of gut microbiota in obese and normal-weight Mexican school-age children and its association with metabolic traits. Pediatric Obesity, 13 (6), 381-388.
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Open Access Artículo
118 - Lopez-Zavala, A.A., Guevara-Hernandez, E., Vazquez-Lujan, L.H., Sanchez-Paz, A., Garcia-Orozco, K.D., Contreras-Vergara, C.A., Lopez-Leal, G., Arvizu-Flores, A.A., Ochoa-Leyva, A., Sotelo-Mundo, R.R.. A novel thymidylate synthase from the Vibrionales, Alteromonadales, Aeromonadales, and Pasteurellales (VAAP) clade with altered nucleotide and folate binding sites. PeerJ, 6, e5023.
Open Access Preprint
119 - Astudillo-Melgar,F., Ochoa-Leyva,A., Utrilla,J., Huerta-Beristain,G.. Bacterial diversity and population dynamics during the fermentation of palm wine from Guerrero Mexico. bioRxiv, preprint posted November 29, 2018.
Open Access Divulgación
120 - Bikel, S., Ochoa-Leyva, A.. La microbiota humana, un mundo microscópico apasionante de explorar. Biotecnología en Movimiento. Revista de divulgación del Instituto de Biotecnología de la UNAM, 13, 30-32.
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121 - Bikel, S., Jacobo-Albavera, L., Sanchez-Munoz, F., Cornejo-Granados, F., Canizales-Quinteros, S., Soberon, X., Sotelo-Mundo, R.R., Del Rio-Navarro, B.E., Mendoza-Vargas, A., Sanchez, F., Ochoa-Leyva, A.. A novel approach for human whole transcriptome analysis based on absolute gene expression of microarray data. PeerJ, 5, e4133.
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122 - Bobes, R.J., Navarrete-Perea, J., Ochoa-Leyva, A., Anaya, V.H., Hernandez, M., Cervantes-Torres, J., Estrada, K., Sanchez-Lopez, F., Soberon, X., Rosas, G., Maroni-Nunes C., Garcia-Varela, M., Sotelo-Mundo, R.R., Lopez-Zavala, A.A., Gevorkian, G., Acero, G., Laclette, J.P., Fragoso, G., Sciutto, E.. Experimental and theoretical approaches to investigate the immunogenicity of Taenia solium-derived KE7 antigen. Infection and Immunity, 85, e00395-17.
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123 - Cornejo-Granados, F., Zatarain-Barron, Z.L., Cantu-Robles, V.A., Mendoza-Vargas, A., Molina-Romero, C., Sanchez, F., Del Pozo-Yauner, L., Hernandez-Pando, R., Ochoa-Leyva, A.. Secretome Prediction of Two M. tuberculosis Clinical Isolates Reveals Their High Antigenic Density and Potential Drug Targets. Frontiers in Microbiology, 8, 128.
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124 - Cornejo-Granados, F., Lopez-Zavala, A.A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sanchez, F., Vichido, R., Brieba, L.G., Viana, M.T., Sotelo-Mundo, R.R., Ochoa-Leyva, A.. Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions. Scientific Reports, 7 (1), 11783.
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125 - Romero-Hidalgo, S., Ochoa-Leyva, A., Garciarrubio, A., Acuna-Alonzo, V., Antunez-Arguelles, E., Balcazar-Quintero, M., Barquera-Lozano, R., Carnevale, A., Cornejo-Granados, F., Fernandez-Lopez, J.C., Garcia-Herrera, R., Garcia-Ortiz, H., Granados-Silvestre, A., Granados, J., Guerrero-Romero, F., Hernandez-Lemus, E., Leon-Mimila, P., Macin-Perez, G., Martinez-Hernandez, A., Menjivar, M., Morett, E., Orozco, L., Ortiz-Lopez, G., Perez-Villatoro, F., Rivera-Morales, J., Riveros-McKay, F., Villalobos-Comparan, M., Villamil-Ramirez, H., Villarreal-Molina, T., Canizales-Quinteros, S., Soberon, X.. Demographic history and biologically relevant genetic variation of Native Mexicans inferred from whole-genome sequencing. Nature Communications, 8 (1), 1005.
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126 - Lopez-Zavala,A.A., Carrasco-Miranda,J.S., Ramirez-Aguirre,C.D., Lopez-Hidalgo,M., Benitez-Cardoza,C.G., Ochoa-Leyva,A., Cardona-Felix,C.S., Diaz-Quezada,C., Rudino-Pinera,E., Sotelo-Mundo,R.R., Brieba,L.G.. Structural insights from a novel invertebrate triosephosphate isomerase from Litopenaeus vannamei. Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, 1864 (12), 1696-1706.
Open Access Revisión
Open Access Artículo
128 - Dautt-Castro,M., Ochoa-Leyva,A., Contreras-Vergara,C.A., Pacheco-Sanchez,M.A., Casas-Flores,S., Sanchez-Flores,A., Kuhn,D.N., Islas-Osuna,M.A.. Mango (Mangifera indica L.) cv. Kent fruit mesocarp de novo transcriptome assembly identifies gene families important for ripening. Frontiers in Plant Science, 6.
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129 - Gomez,S., Adalid-Peralta,L., Palafox-Fonseca,H., Cantu-Robles,V.A., Soberon,X., Sciutto,E., Fragoso,G., Bobes,R.J., Laclette,J.P., Yauner,L.D., Ochoa-Leyva,A.. Genome analysis of Excretory/Secretory proteins in Taenia solium reveals their Abundance of Antigenic Regions (AAR). Scientific Reports, 5, 9683 [erratum en vol 5 (12385) ].
Internacional
130 - Pozo-Yauner,L., Becerril,B., Ochoa-Leyva,A., Rodriguez-Ambriz,S.L., Perez-Carrion,J.I., Zavala-Padilla,G., Sanchez-Lopez,R., Fernandez-Velasco,D.A.. The Structural Determinants of the Immunoglobulin Light Chain Amyloid Aggregation. Physical Biology of Proteins and Peptides: Theory, Experiment, and Simulation. 1-28, Cham.
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131 - Del Pozo-Yauner,L., Wall,J.S., Gonzalez-Andrade,M., Sanchez-Lopez,R., Rodriguez-Ambriz,S.L., Perez-Carreon,J.I., Ochoa-Leyva,A., Fernandez-Velasco,D.A.. The N-terminal strand modulates immunoglobulin light chain fibrillogenesis. Biochemical and Biophysical Research Communications, 443 (2), 495-499.
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132 - Ghaffari,N., Sanchez-Flores,A., Doan,R., Garcia-Orozco,K.D., Chen,P.L., Ochoa-Leyva,A., Lopez-Zavala,A.A., Carrasco,J.S., Hong,C., Brieba,L.G., Rudino-Pinera,E., Blood,P.D., Sawyer,J.E., Johnson,C.D., Dindot,S.V., Sotelo-Mundo,R.R., Criscitiello,M.F.. Novel transcriptome assembly and improved annotation of the whiteleg shrimp (Litopenaeus vannamei), a dominant crustacean in global seafood mariculture. Scientific Reports, 4, 7081.
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133 - Gomez-Jimenez,S., Noriega-Orozco,L., Sotelo-Mundo,R.R., Cantu-Robles,V.A., Cobian-Guemes,A.G., Cota-Verdugo,R.G., Gamez-Alejo,L.A., Del Pozo-Yauner,L., Guevara-Hernandez,E., Garcia-Orozco,K.D., Lopez-Zavala,A.A., Ochoa-Leyva,A.. High-Quality Draft Genomes of Two Vibrio parahaemolyticus Strains Aid in Understanding Acute Hepatopancreatic Necrosis Disease of Cultured Shrimps in Mexico. Genome Announcements, 2 (4). *
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134 - Lara-Gonzalez,S., Estrella-Hernandez,P., Ochoa-Leyva,A., Portillo-Tellez,M.C., Caro-Gomez,L.A., Figueroa-Angulo,E.E., Salgado-Lugo,H., Miranda-Ozuna,J.F., Ortega-Lopez,J., Arroyo,R., Brieba,L.G., Benitez-Cardoza,C.G.. Structural and thermodynamic folding characterization of triosephosphate isomerases from Trichomonas vaginalis reveals the role of destabilizing mutations following gene duplication. Proteins: Structure, Function and Bioinformatics, 82 (1), 22-33. *
Open Access Artículo
Artículo
136 - Tsai,I.J., Zarowiecki,M., Holroyd,N., Garciarrubio,A., Sanchez-Flores,A., Brooks,K.L., Tracey,A., Bobes,R.J., Fragoso,G., Sciutto,E., Aslett,M., Beasley,H., Bennett,H.M., Cai,Jianping, Camicia,F., Clark,R., Cucher,M., De Silva,N., Day,T.A., Deplazes,P., Estrada,K., Fernandez,C., Holland,P.W.H., Hou,Junling, Hu,Songnian, Huckvale,Thomas, Hung,S.S., Kamenetzky,L., Keane,J.A., Kiss,F., Koziol,U., Lambert,O., Liu,K., Luo,Xuenong, Luo,Yingfeng, Macchiaroli,N., Nichol,S., Paps,Jordi, Parkinson,J., Pouchkina-Stantcheva,N., Riddiford,N., Rosenzvit,M., Salinas,G., Wasmuth,James D., Zamanian,M., Zheng,Yadong, Cai,Xuepeng, Soberon,X., Olson,P.D., Laclette,J.P., Brehm,Klaus, Berriman,M., Ochoa-Leyva,A.. The genomes of four tapeworm species reveal adaptations to parasitism. Nature, 496 (7443), 57-63.
Artículo
137 - Figueroa-Angulo,E.E., Estrella-Hernandez,P., Salgado-Lugo,H., Ochoa-Leyva,A., Gomez-Puyou,A., Campos,S.S., Montero-Moran,G., Ortega-Lopez,J., Saab-Rincon,G., Arroyo,R., Benitez-Cardoza,C.G., Brieba,L.G.. Cellular and biochemical characterization of two closely related triosephosphate isomerases from Trichomonas vaginalis. Parasitology, 139 (13), 1729-1738.
Artículo
141 - Wright,H., Noda-Garcia,L., Ochoa-Leyva,A., Hodgson,D.A., Fulop,V., Barona-Gomez,F.. The structure/function relationship of a dual-substrate (betaalpha)(8)-isomerase. Biochemical and Biophysical Research Communications, 365 (1), 16-21.
142 - Ochoa Leyva, Adrian. Diseno de proteinas a traves de intercambio de asas cataliticas en barriles TIM. Instituto de Biotecnologia, Maestria en Ciencias Bioquimicas, UNAM.
Internacional
143 - Barona-Gomez,F., Ochoa-Leyva,A., Soberon,X.. Advances and perspectives in protein engineering: from natural history to directed evolution of enzymes. Advances in Protein Physical Chemistry. 407-438, Kerala: Research Signpost.