Dr. Cuauhtémoc Licona Cassani
Investigador Titular A Tiempo Completo
Análisis de diversidad genética, metabólica y microbiana de ambientes con aplicaciones biotecnológicas
Biología sintética
Bioprospección y descubrimiento de productos naturales en actinomicetos
Desarrollo de biosensores
Ingeniería metabólica
Doctorado, Dr. en Filosofía
* Indica publicación con otra institución de adscripción
Total de publicaciones: 74
- Tipo
- Fecha
Artículo
1 - Corona-Cervantes,K., Urrutia-Baca,V.H., Gamez-Valdez,J.S., Jimenez-Lopez,B., Rodriguez-Gutierrez,N.A., Chavez-Caraza,K., Espiricueta-Candelaria,F., Salas-Villalobos,U.A., Ramos-Parra,P.A., Gutierrez-Uribe,J.A., Brunck,M., Chuck-Hernandez,C., Licona-Cassani,C. (2026). Maternal obesity alters human milk oligosaccharides content and correlates with early acquisition of late colonizers in the neonatal gut microbiome.
Gut Microbes,
18 (1),
2607043.
Artículo
2 - Hernandez-Rodriguez,D., Contreras,A., Melgar-Lalanne,G., Lara Arellano,S.S., Meza,J.E., Licona-Cassani,C., Viveros,R. (2026). Fecal microbiota composition concerning body mass index and early-life factors in Mexican preschool-aged children: a cross-sectional study.
PeerJ,
14,
e21253.
Revisión
3 - Perez-Morales,G., Merino,E., Cevallos,M.A., Gosset,G., Licona-Cassani,C., Caspeta,L., Martinez,A. (2026). Toward a systems metabolic engineering approach to improve thermotolerance of Escherichia coli.
Microbial Cell Factories,
25,
108.
Revisión in press
4 - Trejo-Alarcon,L.M., Tierrafria,V.H., Salazar-Garcia,L.M., Gonzalez-Salazar,L.A., Gonzalez-Aquino,J.C., Martinez,A., Licona-Cassani,C. (2026). Translating biosynthetic gene cluster architecture into biosensor design for microbial natural product discovery.
Essays in Biochemistry, Jun 3 [Online ahead of print],
EBC20250015.
Artículo
5 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,W.I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N. (2026). Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
ISME Communications,
6 (1),
ycag063.
*
Artículo
6 - Alvarado-Pena,N., Munoz-Torrico,M., Narvaez-Diaz,L., Mejia-Ponce,P.M, Becerril-Vargas,E., Zuniga,J., Muniz-Salazar,R., Laniado-Laborin,R., Licona-Cassani,C., Soberon,X., Silva-Herzog,E. (2025). Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes.
Frontiers in Microbiology,
16,
1666838.
Artículo
7 - Chimal-Munoz,M., Perez-Martinez,D.E., Bermudez-Hernandez,G.A., Mejia-Ponce,P.M., Licona-Cassani,C., Muniz-Salazar,R., Montero,H., Zenteno-Cuevas,R. (2025). Whole-Genome Sequence Analysis to Assess Mutations in Efflux Pumps in Mycobacterium tuberculosis: The Influence in Drug Resistance.
Microorganisms,
13 (6),
1306.
*
Artículo
8 - Elakkya,M., Gonzalez-Salazar,L.A., Lopez-Reyes,K., Rebelo-Romao,I., Sousa,A., Godde,V., Niehaus,K., Thenappan,D.P., Vilchez,J.I., Paul,S., Licona-Cassani,C. (2025). Comparative genomics and metabolomics reveal phytohormone production, nutrient acquisition, and osmotic stress tolerance in Azotobacter chroococcum W5.
Frontiers in Microbiology,
16,
1626016.
Artículo
9 - Gallardo-Camarena,M.V., Reverchon,F., Mendez-Bravo,A., Torres-Acosta,M.A., Licona-Cassani,C. (2025). Control of avocado anthracnose by carposphere-associated Kosakonia cowanii VG1 for agricultural applications.
AMB Express,
15 (1).
*
Artículo
10 - Gallardo-Camarena,M.V., Torres-Acosta,M.A., Licona-Cassani,C. (2025). Economic evaluation of large-scale production for Colletotrichum antagonists as biocontrol agents against anthracnose.
Journal of Chemical Technology and Biotechnology,
100 (5),
1117-1128.
*
Artículo
11 - Gamez-Valdez,J.S., Corona-Cervantes,K., Sanchez-Salguero,E.S., Alcorta-Garcia,M.R., Lopez-Villasenor,C.N., Carballo-Castaneda,R.A., Moreno-Ulloa,A., Lara-Diaz,V.J., Brunck,M.E.G., Licona-Cassani,C. (2025). Analysis of human colostrum reveals differential co-occurrence networks of metabolites, microbiota and cytokines in maternal obesity.
Food & Function,
16 (14),
5900-5916.
*
Artículo
12 - Morey-Leon,G., Mejia-Ponce,P.M., Fernandez-Cadena,J.C, Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Fresia,P, Berna,L (2025). Global epidemiology of Mycobacterium tuberculosis lineage 4 insights from Ecuadorian genomic data.
Scientific Reports,
15 (1).
*
Artículo
13 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Gonzalez-Valdez,J., Aguilar,O., Renard,C.M.G.C., Licona-Cassani,C. (2025). Influence of molar ratio and pH on physicochemical characteristics of genipin-derived pigments formed at cold and mild temperatures.
Food Chemistry Advances,
7,
100983.
*
Artículo
14 - Ramos-Garcia,A.A., Mejia-Ponce,P.M., Salem-Mojica,N., Santos-Diaz,A., Martinez-Ledesma,E., Licona-Cassani,C. (2025). FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis.
Bioinformatics,
41 (7),
btaf341.
Artículo
15 - Rodriguez-Orduna,L., Aguilar,C., Hernandez-Melgar,A.G., Arocha-Garza,H.F., Verdel-Aranda,K., Vazquez-Rodriguez,A., Lopez-Ribot,J.L., Moreno-Ulloa,A., Licona-Cassani,C. (2025). Biodiscovery of Actinomycetota through metabolo-genomics reveals functional diversity across contrasting Mexican ecosystems.
Microbial Genomics,
11 (10),
001557 [corrigendum vol 12 (2)].
Artículo
16 - Salazar-Garcia,L.M., Damas-Ramos,L.C., Trejo-Alarcon,L.M., Rago,D., Ahonen,L., Cruz-Morales,P., Ponce-Noyola,P., Licona-Cassani,C. (2025). CRISPR-driven enhanced hydrocarbon emulsification in an environmental Pseudomonas aeruginosa strain.
Microbial Cell Factories,
24 (1),
151.
Artículo
17 - Trejo-Alarcon,L.M., Cano-Prieto,C., Calheiros de Carvalho,A., Rago,D., Ahonen,L., Cruz-Morales,P., Licona-Cassani,C. (2025). Integrative metabolo-genomics suggests a biosynthetic pathway for tetrangulol in Streptomyces sp. KL110A.
World Journal of Microbiology & Biotechnology,
41 (3).
*
Artículo
18 - Trejo-Alarcon,L.M., Cruz-Morales,P., Licona-Cassani,C. (2025). Draft genome sequence of Streptomyces sp. CC302I with non-canonical biosynthetic gene clusters for codon-readthrough activity.
Microbiology Resource Announcements,
14 (2).
*
Artículo
19 - Zdouc,M.M., Blin,K., Louwen,N.L.L., Navarro,J., Loureiro,C., Bader,C.D., Bailey,C.B., Barra,L., Booth,T.J., Bozhuyuk,K.A.J., Cediel-Becerra,J.D.D., Charlop-Powers,Z., Chevrette,M.G., Chooi,Y.H., D'Agostino,P.M., de Rond T., Del Pup E., Duncan,K.R., Gu,W., Hanif,N., Helfrich,E.J.N., Jenner,M., Katsuyama,Y., Korenskaia,A., Krug,D., Libis,V., Lund,G.A., Mantri,S., Morgan,K.D., Owen,C., Phan,C.S., Philmus,B., Reitz,Z.L., Robinson,S.L., Singh,K.S., Teufel,R., Tong,Y., Tugizimana,F., Ulanova,D., Winter,J.M., Aguilar,C., Akiyama,D.Y., Al-Salihi,S.A.A., Alanjary,M., Alberti,F., Aleti,G., Alharthi,S.A., Rojo,M.Y.A., Arishi,A.A., Augustijn,H.E., Avalon,N.E., Avelar-Rivas,J.A., Axt,K.K., Barbieri,H.B., Barbosa,J.C.J., Barboza Segato,L.G., Barrett,S.E., Baunach,M., Beemelmanns,C., Beqaj,D., Berger,T., Bernaldo-Aguero,J., Bettenbuhl,S.M., Bielinski,V.A., Biermann,F., Borges,R.M., Borriss,R., Breitenbach,M., Bretscher,K.M., Brigham,M.W., Buedenbender,L., Bulcock,B.W., Cano-Prieto,C., Capela,J., Carrion,V.J., Carter,R.S., Castelo-Branco,R., Castro-Falcon,G., Chagas,F.O., Charria-Giron,E., Chaudhri,A.A., Chaudhry,V., Choi,H., Choi,Y., Choupannejad,R., Chromy,J., Donahey,M.S.C., Collemare,J., Connolly,J.A., Creamer,K.E., Crusemann,M., Cruz,A.A., Cumsille,A., Dallery,J.F., Damas-Ramos,L.C., Damiani,T., de Kruijff M., Martin,B.D., Sala,G.D., Dillen,J., Doering,D.T., Dommaraju,S.R., Durusu,S., Egbert,S., Ellerhorst,M., Faussurier,B., Fetter,A., Feuermann,M., Fewer,D.P., Foldi,J., Frediansyah,A., Garza,E.A., Gavriilidou,A., Gentile,A., Gerke,J., Gerstmans,H., Gomez-Escribano,J.P., Gonzalez-Salazar,L.A., Grayson,N.E., Greco,C., Gomez,J.E.G., Guerra,S., Flores,S.G., Gurevich,A., Gutierrez-Garcia,K., Hart,L., Haslinger,K., He,B., Hebra,T., Hemmann,J.L., Hindra,H., Hoing,L., Holland,D.C., Holme,J.E., Horch,T., Hrab,P., Hu,J., Huynh,T.H., Hwang,J.Y., Iacovelli,R., Iftime,D., Iorio,M., Jayachandran,S., Jeong,E., Jing,J., Jung,J.J., Kakumu,Y., Kalkreuter,E., Kang,K.B., Kang,S., Kim,W., Kim,G.J., Kim,H., Kim,H.U., Klapper,M., Koetsier,R.A., Kollten,C., Kovacs,A.T., Kriukova,Y., Kubach,N., Kunjapur,A.M., Kushnareva,A.K., Kust,A., Lamber,J., Larralde,M., Larsen,N.J., Launay,A.P., Le,N.T., Lebeer,S., Lee,B.T., Lee,K., Lev,K.L., Li,S.M., Li,Y.X., Licona-Cassani,C., Lien,A., Liu,J., Lopez,J.A.V., Machushynets,N.V., Macias,M.I., Mahmud,T., Maleckis,M., Martinez-Martinez,A.M., Mast,Y., Maximo,M.F., McBride,C.M., McLellan,R.M., Bhatt,K.M., Melkonian,C., Merrild,A., Metsa-Ketela,M., Mitchell,D.A., Muller,A.V., Nguyen,G.S., Nguyen,H.T., Niedermeyer,T.H.J., O'Hare,J.H., Ossowicki,A., Ostash,B.O., Otani,H., Padva,L., Paliyal,S., Pan,X., Panghal,M., Parade,D.S., Park,J., Parra,J., Rubio,M.P., Pham,H.T., Pidot,S.J., Piel,J., Pourmohsenin,B., Rakhmanov,M., Ramesh,S., Rasmussen,M.H., Rego,A., Reher,R., Rice,A.J., Rigolet,A., Romero-Otero,A., Rosas-Becerra,L.R., Rosiles,P.Y., Rutz,A., Ryu,B., Sahadeo,L.A., Saldanha,M., Salvi,L., Sanchez-Carvajal,E., Santos-Medellin,C., Sbaraini,N., Schoellhorn,S.M., Schumm,C., Sehnal,L., Selem,N., Shah,A.D., Shishido,T.K., Sieber,S., Silviani,V., Singh,G., Singh,H., Sokolova,N., Sonnenschein,E.C., Sosio,M., Sowa,S.T., Steffen,K., Stegmann,E., Streiff,A.B., Struder,A., Surup,F., Svenningsen,T., Sweeney,D., Szenei,J., Tagirdzhanov,A., Tan,B., Tarnowski,M.J. (2025). MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.
Nucleic Acids Research,
53 (D1),
gkae1115,
D678-D690.
Artículo
20 - Aguilar,C., Alwali,A., Mair,M., Rodriguez-Orduna,L., Contreras-Peruyero,H., Modi,R., Roberts,C., Selem-Mojica,N., Licona-Cassani,C., Parkinson,E.I. (2024). Actinomycetota bioprospecting from ore-forming environments.
Microbial Genomics,
10 (5),
001253.
*
Artículo
21 - Alwali,A.Y., Santos,D., Aguilar,C., Birch,A., Rodriguez-Ordunea,L., Roberts,C.B., Modi,R., Licona-Cassani,C., Parkinson,E.I. (2024). Discovery of Streptomyces species CS-62, a novel producer of the Acinetobacter baumannii selective antibiotic factumycin.
Journal of Industrial Microbiology & Biotechnology,
51,
kuae014.
*
Artículo
22 - Bermudez-Hernandez,G.A., Perez-Martinez,D., Ortiz-Leon,M.C., Muniz-Salazar,R., Licona-Cassani,C., Zenteno-Cuevas,R. (2024). Mutational Dynamics Related to Antibiotic Resistance in M. tuberculosis Isolates from Serial Samples of Patients with Tuberculosis and Type 2 Diabetes Mellitus.
Microorganisms,
12 (2).
*
Artículo
23 - Contreras-Peruyero,H., Guerrero-Flores,S., Zirion-Martinez,C., Mejia-Ponce,P.M., Navarro-Miranda,M., Lovaco-Flores,J.A., Ibarra-Rodriguez,J.M., Pashkov,A., Licona-Cassani,C., Selem-Mojica,N. (2024). Meeting the challenge of genomic analysis: a collaboratively developed workshop for pangenomics and topological data analysis.
Bioinformatics Advances,
4 (1).
*
Artículo
24 - Deantas-Jahn,C., Mendoza,S.N., Licona-Cassani,C., Orellana,C., Saa,P.A. (2024). Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Applied Microbiology and Biotechnology,
108 (1),
310.
*
Artículo
25 - Lozano-Aguirre,L., Avitia,M., Lappe-Oliveras,P., Licona-Cassani,C., Cevallos,M.A., Le Borgne,S. (2024). Draft genomes of four Kluyveromyces marxianus isolates retrieved from the elaboration process of henequen (Agave fourcroydes) mezcal.
Microbiology Resource Announcements,
13 (3).
*
Artículo
26 - Mejia-Ponce,P.M., Chimal-Munoz,M., Zenteno-Cuevas,R., Licona-Cassani,C. (2024). Draft genome sequences of 12 Mycolicibacterium fortuitum isolates from human pulmonary infections in Veracruz, Mexico.
Microbiology Resource Announcements,
13 (4).
*
Artículo
27 - Rodriguez-Orduna,L., Lara-Diaz,V.J., Alcorta-Garcia,M.R., Lopez-Villasenor,C.N., Licona-Cassani,C. (2024). Genome sequences of 70 multidrug-resistant Gram-negative isolates in high-risk neonates in the Northeast of Mexico.
Microbiology Resource Announcements,
13 (9).
*
Artículo
28 - Zuffa,S., Schmid,R., Bauermeister,A., Gomes,P., Caraballo-Rodriguez,A.M., El Abiead,Y., Aron,A.T., Gentry,E.C., Zemlin,J., Meehan,M.J., Avalon,N.E., Cichewicz,R.H., Buzun,E., Terrazas,M.C., Hsu,C.Y., Oles,R., Ayala,A.V., Zhao,J., Chu,H., Kuijpers,M.C.M., Jackrel,S.L., Tugizimana,F., Nephali,L.P., Dubery,I.A., Madala,N.E., Moreira,E.A., Costa-Lotufo,L.V., Lopes,N.P., Rezende-Teixeira,P., Jimenez,P.C., Rimal,B., Patterson,A.D., Traxler,M.F., Pessotti,R.D.C., varado-Villalobos,D., Tamayo-Castillo,G., Chaverri,P., Escudero-Leyva,E., Quiros-Guerrero,L.M., Bory,A.J., Joubert,J., Rutz,A., Wolfender,J.L., Allard,P.M., Sichert,A., Pontrelli,S., Pullman,B.S., Bandeira,N., Gerwick,W.H., Gindro,K., Massana-Codina,J., Wagner,B.C., Forchhammer,K., Petras,D., Aiosa,N., Garg,N., Liebeke,M., Bourceau,P., Kang,K.B., Gadhavi,H., de Carvalho,L.P.S., Silva dos Santos,M., Perez-Lorente,A.I., Molina-Santiago,C., Romero,D., Franke,R., Bronstrup,M., Vera Ponce de Leon,A., Pope,P.B., La Rosa,S.L., La Barbera,G., Roager,H.M., Laursen,M.F., Hammerle,F., Siewert,B., Peintner,U., Licona-Cassani,C., Rodriguez-Orduna,L., Rampler,E., Hildebrand,F., Koellensperger,G., Schoeny,H., Hohenwallner,K., Panzenboeck,L., Gregor,R., O'Neill,E.C., Roxborough,E.T., Odoi,J., Bale,N.J., Ding,S., Sinninghe Damste,J.S., Guan,X.L., Cui,J.J., Ju,K.S., Silva,D.B., Silva,F.M.R., da Silva,G.F., Koolen,H.H.F., Grundmann,C., Clement,J.A., Mohimani,H., Broders,K., McPhail,K.L., Ober-Singleton,S.E., Rath,C.M., McDonald,D., Knight,R., Wang,M., Dorrestein,P.C. (2024). microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Nature Microbiology,
9 (2),
336-345.
*
Artículo
29 - Gonzalez-Salazar,L.A., Quezada,M., Rodriguez-Orduna,L., Ramos-Aboites,H., Capon,R.J., Souza-Saldivar,V., Barona-Gomez,F., Licona-Cassani,C. (2023). Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.
Microbial Genomics,
9 (1).
*
Artículo
30 - Mejia-Ponce,P.M., Ramos-Gonzalez,E.J., Ramos-Garcia,A.A., Lara-Ramirez,E.E., Soriano-Herrera,A.R., Medellin-Luna,M.F., Valdez-Salazar,F., Castro-Garay,C.Y., Nunez-Contreras,J.J., De Donato-Capote,M., Sharma,A., Castaneda-Delgado,J.E., Zenteno-Cuevas,R., Enciso-Moreno,J.A., Licona-Cassani,C. (2023). Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico.
PLoS ONE,
18 (10 October).
*
Artículo
31 - Morey-Leon,G., Mejia-Ponce,P.M., Granda Pardo,J.C., Munoz-Mawyin,K., Fernandez-Cadena,J.C., Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Berna,L. (2023). A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools.
PLoS ONE,
18 (12 December).
*
Artículo nacional
32 - Perez-Cabeza de Vaca,R., Cortes-Espinosa,T., Maldonado-Arriaga,B., Suarez-Cuenca,J.A., Sandoval-Jimenez,S., Mondragon-Teran,P., Navarro-Gerrard,C., Paredes-Amenabar,C., Corazon-Trujillo de la Fuente,K., Romero-Lozania,J.A., Lopez-Gomez,J.G., Licona-Cassani,C. (2023). Vedolizumab como terapia primaria en colitis ulcerosa y en la enfermedad de Crohn de moderada a grave: revisión y metaanálisis.
Revista mexicana de enfermedades inflamatorias inmunomediadas,
95 (2),
31-39.
*
Artículo
33 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Renard,C.M.G.C., Contreras-Esquivel,J.C., Rodriguez-Rodriguez,J., Aguilar,O., Gonzalez-Valdez,J., Licona-Cassani,C. (2023). Physical characterization of genipin complexes coupled with multivariate data analysis to assess formed pigments.
Colloids and Surfaces A: Physicochemical and Engineering Aspects,
673,
131774.
*
Artículo
34 - Rodriguez-Sanchez,A.C., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Cumsille,A., Undabarrena,A., Camara,B., Selem-Mojica,N., Licona-Cassani,C. (2023). Phylogenetic classification of natural product biosynthetic gene clusters based on regulatory mechanisms.
Frontiers in Microbiology,
14.
*
Artículo
35 - Urrutia-Baca,V.H., Chuck-Hernandez,C., Gutierrez-Uribe,J., Ramos-Parra,P.A., Licona-Cassani,C. (2023). Development and validation of a versatile analytical method for absolute quantification of seven oligosaccharides in human, bovine, and goat milk.
Heliyon,
9 (11).
*
Artículo
36 - Perez-Martinez,D.E., Bermudez-Hernandez,G.A., Madrazo-Moya,C.F., Cancino-Munoz,I., Montero,H., Licona-Cassani,C., Muniz-Salazar,R., Comas,I., Zenteno-Cuevas,R. (2022). SNPs in Genes Related to DNA Damage Repair in Mycobacterium Tuberculosis: Their Association with Type 2 Diabetes Mellitus and Drug Resistance.
Genes,
13 (4).
*
Artículo
37 - Pineiro-Salvador,R., Vazquez-Garza,E., Cruz-Cardenas,J.A., Licona-Cassani,C., Garcia-Rivas,G., Moreno-Vasquez,J., Alcorta-Garcia,M.R., Lara-Diaz,V.J., Brunck,M.E.G. (2022). A cross-sectional study evidences regulations of leukocytes in the colostrum of mothers with obesity.
BMC Medicine,
20 (1).
*
Artículo
38 - Thenappan,D.P., Gonzalez-Salazar,L.A., Licona-Cassani,C., Kannepalli,A. (2022). Draft Genome Sequence of Streptomyces sp. Strain FB2, Isolated from Rice Rhizosphere.
Microbiology Resource Announcements,
11 (6).
*
Artículo
39 - Enriquez-Ochoa,D., Melendez-Martinez,D., Aguilar-Yanez,J.M., Licona-Cassani,C., Mayolo-Deloisa,K. (2021). Development of aqueous two-phase systems-based approaches for the selective recovery of metalloproteases and phospholipases A2 toxins from Crotalus molossus nigrescens venom.
Bioresources and Bioprocessing,
8 (1).
*
Artículo
40 - Flores-Gatica,M., Castaneda-Aponte,H., Gil-Garzon,M.R., Mora-Galvez,L.M., Banda-Magana,M.P., Jauregui-Jauregui,J.A., Torres-Acosta,M.A., Mayolo-Deloisa,K., Licona-Cassani,C. (2021). Primary recovery of hyaluronic acid produced in Streptococcus equi subsp. zooepidemicus using PEG?_"citrate aqueous two-phase systems.
AMB Express,
11 (1),
123.
*
Artículo
41 - Gamez-Valdez,J.S., Garcia-Mazcorro,J.F., Montoya-Rincon,A.H., Rodriguez-Reyes,D.L., Jimenez-Blanco,G., Alanis-Rodriguez,M.T., Perez-Cabeza de Vaca,R., Alcorta-Garcia,M.R., Brunck,M., Lara-Diaz,V.J., Licona-Cassani,C. (2021). Differential analysis of the bacterial community in colostrum samples from women with gestational diabetes mellitus and obesity.
Scientific Reports,
11 (1).
*
Artículo
42 - Jimenez-Ruano,A.C., Madrazo-Moya,C.F., Cancino-Munoz,I., Mejia-Ponce,P.M., Licona-Cassani,C., Comas,I., Muniz-Salazar,R., Zenteno-Cuevas,R. (2021). Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance.
Scientific Reports,
11 (1),
1870.
*
Artículo
43 - Maldonado-Arriaga,B., Sandoval-Jimenez,S., Rodriguez-Silverio,J., Alcaraz-Estrada,S.L., Cortes-Espinosa,T., Perez-Cabeza de Vaca,R., Licona-Cassani,C., Gomez-Valdez,J.S., Shaw,J., Mondragon-Teran,P., Hernandez-Cortez,C., Suarez-Cuenca,J.A., Castro-Escarpulli,G. (2021). Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis.
Microbiologyopen,
10 (2).
*
Artículo
44 - Torres-Acosta,M.A., Castaneda-Aponte,H.M., Mora-Galvez,L.M., Gil-Garzon,M.R., Banda-Magana,M.P., Marcellin,E., Mayolo-Deloisa,K., Licona-Cassani,C. (2021). Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic Acid.
Frontiers in Bioengineering and Biotechnology,
9.
*
Revisión
45 - Avila-Rodriguez,M.I., Melendez-Martinez,D., Licona-Cassani,C., Aguilar-Yanez,J.M., Benavides,J., Sanchez,M.L. (2020). Practical context of enzymatic treatment for wound healing: A secreted protease approach (review).
Biomedical Reports,
13 (1),
3-14.
*
Artículo
46 - Gallegos-Lopez,S., Mejia-Ponce,P.M., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Souza-Saldivar,V., Licona-Cassani,C. (2020). Draft Genome Sequence of Streptomyces sp. Strain C8S0, isolated from a highly oligotrophic sediment.
Microbiology Resource Announcements,
9 (14).
*
Artículo
47 - Garcia-Mazcorro,J.F., Kawas,J.R., Licona-Cassani,C., Mertens-Talcott,S., Noratto,G. (2020). Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity.
PeerJ,
8.
*
Artículo
48 - Garza-Aguilar,S.M., Garcia-Salinas,C., Mejia-Ponce,P.M, Licona-Cassani,C, Ramos-Parra,P.A, Diaz de la Garza,R.I. (2020). The complexity of folate polyglutamylation in plants: Postharvest ripening and ethylene modulate polyglutamylated profiles in climacteric fruits plus systematic analysis of the glutamyl tail-editing enzymes.
Scientia Horticulturae,
273 (109588).
*
Artículo
49 - Melendez-Martinez,D., Plenge-Tellechea,L.F., Gatica-Colima,A., Cruz-Perez,M.S., Aguilar-Yanez,J.M., Licona-Cassani,C. (2020). Functional mining of the crotalus spp. venom protease repertoire reveals potential for chronic wound therapeutics.
Molecules,
25 (15).
*
Artículo
50 - Orellana,C.A., Zaragoza,N.E., Licona-Cassani,C., Palfreyman,R.W., Cowie,N., Moonen,G., Moutafis,G., Power,J., Nielsen,L.K., Marcellin,E. (2020). Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani.
Journal of Industrial Microbiology & Biotechnology,
47 (12),
1059-1073.
*
Artículo
51 - Khalil,Z.G., Cruz-Morales,P., Licona-Cassani,C., Marcellin,E., Capon,R.J. (2019). Inter-Kingdom beach warfare: Microbial chemical communication activates natural chemical defences.
ISME Journal,
13 (1),
147-158.
*
Artículo
52 - Cruz-Morales,P., Ramos-Aboites,H.E., Licona-Cassani,C., Selem-Mojica,N., Mejia-Ponce,P.M., Souza-Saldivar,V., Barona-Gomez,F. (2017). Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits.
FEMS Microbiology Ecology,
93 (9).
*
Artículo
53 - Quezada,M., Licona-Cassani,C., Cruz-Morales,P., Salim,A.A., Marcellin,E., Capon,R.J., Barona-Gomez,F. (2017). Diverse cone-snail species harbor closely related Streptomyces species with conserved chemical and genetic profiles, including polycyclic tetramic acid macrolactams.
Frontiers in Microbiology,
8 (NOV).
*
Artículo
54 - Steffani-Vallejo,J.L., Zuniga,C., Cruz-Morales,P., Lozano,L., Morales,M., Licona-Cassani,C., Revah,S., Utrilla,J. (2017). Draft genome sequence of sphingobacterium sp. CZ-UAM, isolated from a methanotrophic consortium.
Genome Announcements,
5 (33).
*
Artículo
55 - Licona-Cassani,C., Steen,J.A., Zaragoza,N.E., Moonen,G., Moutafis,G., Hodson,M.P., Power,J., Nielsen,L.K., Marcellin,E. (2016). Tetanus toxin production is triggered by the transition from amino acid consumption to peptides.
Anaerobe,
41,
113-124.
*
Artículo
56 - Marcellin,E., Behrendorff,J.B., Nagaraju,S., Detissera,S., Segovia,S., Palfreyman,R.W., Daniell,J., Licona-Cassani,C., Quek,L.E., Speight,R., Hodson,M.P., Simpson,S.D., Mitchell,W.P., Kopke,M., Nielsen,L.K. (2016). Low carbon fuels and commodity chemicals from waste gases-systematic approach to understand energy metabolism in a model acetogen.
Green Chemistry,
18 (10),
3020-3028.
*
Artículo
57 - Tierrafria,V.H., Licona-Cassani,C., Maldonado-Carmona,N., Romero-Rodriguez,A., Centeno-Leija,S., Marcellin,E., Rodriguez-Sanoja,R., Ruiz-Villafan,B., Nielsen,L.K., Sanchez,S. (2016). Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production.
Applied Microbiology and Biotechnology,
100 (21),
9229-9237 [Correction 104 (8) 3687].
*
Revisión
58 - Licona-Cassani,C., Cruz-Morales,P., Manteca,A., Barona-Gomez,F., Nielsen,L.K., Marcellin,E. (2015). Systems Biology Approaches to Understand Natural Products Biosynthesis.
Frontiers in Bioengineering and Biotechnology,
3.
*
Artículo
59 - Navone,L., Macagno,J.P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Gramajo,H., Rodriguez,E. (2015). AllR controls the expression of Streptomyces coelicolor allantoin pathway genes.
Applied and Environmental Microbiology,
81 (19),
6649-6659.
*
Artículo
60 - Liao,C., Rigali,S., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Ye,B.C. (2014). Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea.
Microbiology (United Kingdom),
160 (9),
1914-1928.
*
Artículo
61 - Licona-Cassani,C., Lara,A.R., Cabrera-Valladares,N., Escalante,A., Hernandez-Chavez,G., Martinez,A., Bolivar,F., Gosset,G. (2014). Inactivation of Pyruvate Kinase or the Phosphoenolpyruvate: Sugar Phosphotransferase System Increases Shikimic and Dehydroshikimic Acid Yields from Glucose in Bacillus subtilis.
Journal of Molecular Microbiology and Biotechnology,
24 (1),
37-45.
Artículo
62 - Licona-Cassani,C., Lim,S., Marcellin,E., Nielsen,L.K. (2014). Temporal dynamics of the saccharopolyspora erythraea phosphoproteome.
Molecular and Cellular Proteomics,
13 (5),
1219-1230.
*
Artículo
63 - Navone,L., Casati,P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Rodriguez,E., Gramajo,H. (2014). Allantoin catabolism influences the production of antibiotics in Streptomyces coelicolor.
Applied Microbiology and Biotechnology,
98 (1),
351-360.
*
Artículo
64 - Marcellin,E., Licona-Cassani,C., Mercer,T.R., Palfreyman,R.W., Nielsen,L.K. (2013). Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.
BMC Genomics,
14 (1).
*
Artículo
65 - Marcellin,E., Mercer,T.R., Licona-Cassani,C., Palfreyman,R.W., Dinger,M.E., Steen,J.A., Mattick,J.S., Nielsen,L.K. (2013). Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.
BMC Genomics,
14 (1).
*
Artículo
66 - Licona-Cassani,C., Marcellin,E., Quek,L.E., Jacob,S., Nielsen,L.K. (2012). Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production.
Antonie Van Leeuwenhoek,
102 (3),
493-502.
*
Artículo
67 - Utrilla,J., Licona-Cassani,C., Marcellin,E., Gosset,G., Nielsen,L.K., Martinez,A. (2012). Engineering and adaptive evolution of Escherichia coli for d-lactate fermentation reveals GatC as a xylose transporter.
Metabolic Engineering,
14 (5),
469-476.
Memoria in extenso
68 - Ramos-Garcia, A. A., Licona-Cassani, C., Santos-Diaz, A. (2025). Multi-Scale Genomic Signatures and Machine Learning for Enhanced Prediction of Antimicrobial Resistance. IEEE 38th International Symposium on Computer-Based Medical Systems (CBMS), Vol. 00, 1-4 - June 2025.
1-4,
Los Alamitos: IEEE Computer Society.
*
Internacional
69 - Perez-Martinez,D., Mejia-Ponce,P., Licona-Cassani,C., de Igartua,E., Bermudez,G., Viveros,D., Zenteno-Cuevas,R. (2023). Drug Resistance in Tuberculosis: Mechanisms, Diagnosis, New Responses, and the Need for an Integrated Approach. Integrated Science.
331-359,
11.
*
70 - Rezaei, Nima, Hosseini, Nastaran-Sadat, Saghazadeh, Amene, Fateh, Abolfazl, Duse, Adriano, Ahmad, Aijaz, Braley, Alexander E., Tahta, Alican, Kamboj, Alisha, Khan, Amer Hayat, Coelho, Ana Cláudia, Fuso, Andrea, Varón, Andrés, Trajman, Anete, Saxena, Anil Kumar, Ganeshpurkar, Ankit, Casapao, Anthony M., Tkachenko, Anton, Devnikar, Anushka V., Moshiri, Arfa, Muñoz-Barrutia, Arrate, Dasgupta, Arunava, Natarajan, Arvind, Gupta, Ashish, Coyne, Ashlan J. Kunz, Jordan, Ashly E., Kumar, Ashok, Ergeshov, Atadzhan, Pourakbari, Babak, Joshi, Basant, Chavarro-Portillo, Bibiana, Soto, Carlos Y., Kanipe, Carly, Schmidt, Christiane Mello, Cox, Christophe, Gómez-Cruz, Clara, Cardoso, Claudete Aparecida Araújo, Sant´Anna, Clemax Couto, Johnson, Courtney, Rodríguez-Silva, Cristhian N., Rosales, Cristian, Licona-Cassani, Cuauhtémoc, Fast, Cynthia D., Pérez-Martínez, Damián, Pizzol, Damiano, Perlman, David C., Philips, Dennis, Viveros, Diana, Fisher, Dina A., Butov, Dmytro, Egelund, Eric F., de Igartua, Everest, Bhatt, Garima, Mgode, Georgies, Quaglio, Gianluca, Putoto, Giovanni, Mini, G. K., Thomas-Richardson, Govind, Wylie, Greg, dos Santos Fernandes, Guilherme Felipe, Bermúdez, Gustavo, Quintas, Hélder, Verma, Himanshu, Eoh, Hyungjin, Putera, Ikhwanuliman, Sivokozov, Ilya, Pires, Isabel, Lee, Jae Jin, Lombard, Jason E., dos Santos, Jean Leandro, Zellweger, Jean-Pierre, Thomas-Richardson, Jenu, Lordson, Jinbert, Prates, João Lucas, Cervantes, Jorge, Porcel, José M., Vaquero, Juan José, Prada, Justina, Kamboj, Kamal, Tabbara, Khalid F., Mussie, Kirubel Manyazewal, Patel, Krupesh, Porcel, Laura, Fiebig, Lena, Mohan, Malu, Yadav, Mange Ram, López-R, Marcela, Correia-Neves, Margarida, da Conceição Fontes, Maria, de Fátima Pombo Bazhuni Sant´Anna, Maria, Cañadas-Ortega, Marina, Singh, Meenakshi, Lause, Michael, Maya-Hoyos, Milena, Omrani, Mir Davood, Palmer, Mitchell V., Ahmad, Mohammad Naiyaz, Seid, Mohammed Assen, Chauhan, Monica, Saxena, Mridula, Marimani, Musa, Srinivas, Nanduri, Beyene, Negussie, Arenas, Nelson E., Cardoso, Nicole, Oliveira, Olena, Silakari, Om, Inlamea, Osvaldo, Tanriverdi, Özgür, Boggiatto, Paola M., Santos, Paola, Mejía-Ponce, Paulina, Soares, Pedro, Sell, Philip, Murumkar, Prashant R., Devanandan, Praveen, Zheng, Qi, Lim, Rachel K., Aurílio, Rafaela Baroni, Ghuge, Rahul B., Barot, Rahul R., Rahul,, Puvvada, Ranadheer Chowdary, Duarte, Raquel, Singh, Ravi, Sinha, Richa, La Distia Nora, Rina, Burny, Robert, Zenteno-Cuevas, Roberto, Mali, Sagar, Shoughy, Samir S., Tarashi, Samira, Mishra, Sapna, Malasala, Satyaveni, Mamishi, Setareh, Siadat, Seyed Davar, Choudhary, Shalki, Mahmoudi, Shima, Chopra, Sidharth, Nandi, Sisir, Faisal, Sobia, Goel, Sonu, Huszár, Stanislav, Field, Stephen K., Singh, Sushil Kumar, Rito, Teresa, Butova, Tetiana, Manning, Thomas, van der Werf, Tjip S., Myasoedov, Valeriy, Vásquez, Vanessa, Muthukumar, Vijey Aanandhi, Singh, Vinayak, Hall, Walter A., Hikmahwati, Wandya, Turgut, Yasar Baris, Thaker, Yatri, Kawabata, Yoshinori, de Reus, Yvette A. (2023). Tuberculosis: Integrated Studies for a Complex Disease 2050. Tuberculosis: Integrated Studies for a Complex Disease.
1063-1098,
Cham: Springer International Publishing.
*
71 - Perez-Cabeza de Vaca, R., Vairappan, B., Cortes-Espinoza, T., Suarez-Cuenca, J. A., Licona-Cassani, C., Maldonado-Arriaga, B., Navarro-Gerrard, C., Morgan-Penagos, D. S., Mondragon-Teran, P., Chagoya De Sanchez, V. (2021). Spontaneous Bacterial Peritonitis: Physiopathological Mechanism and Clinical Manifestations. Advances in Hepatology.
London: Intech Open.
*
Preprint
72 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,Wilson I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N. (2026). Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
bioRxiv,
Preprint posted February 27.
*
Preprint
73 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,W.I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N. (2026). Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
bioRxiv,
Preprint posted 27 February.
*
Preprint
74 - Aguilar,C., Verdel-Aranda,K., Ramos-Aboites, H.E., Morales, M.A., Licona-Cassani,C., Barona-Gómez, F. (2020). Convergent evolution of Streptomyces protease inhibitors involving a tRNA-mediated condensation-minus NRPS.
bioRxiv,
Posted October 28.
Artículo
75 - Corona-Cervantes,K., Urrutia-Baca,V.H., Gamez-Valdez,J.S., Jimenez-Lopez,B., Rodriguez-Gutierrez,N.A., Chavez-Caraza,K., Espiricueta-Candelaria,F., Salas-Villalobos,U.A., Ramos-Parra,P.A., Gutierrez-Uribe,J.A., Brunck,M., Chuck-Hernandez,C., Licona-Cassani,C.. Maternal obesity alters human milk oligosaccharides content and correlates with early acquisition of late colonizers in the neonatal gut microbiome.
Gut Microbes,
18 (1),
2607043.
Artículo
76 - Hernandez-Rodriguez,D., Contreras,A., Melgar-Lalanne,G., Lara Arellano,S.S., Meza,J.E., Licona-Cassani,C., Viveros,R.. Fecal microbiota composition concerning body mass index and early-life factors in Mexican preschool-aged children: a cross-sectional study.
PeerJ,
14,
e21253.
Revisión
77 - Perez-Morales,G., Merino,E., Cevallos,M.A., Gosset,G., Licona-Cassani,C., Caspeta,L., Martinez,A.. Toward a systems metabolic engineering approach to improve thermotolerance of Escherichia coli.
Microbial Cell Factories,
25,
108.
Revisión in press
78 - Trejo-Alarcon,L.M., Tierrafria,V.H., Salazar-Garcia,L.M., Gonzalez-Salazar,L.A., Gonzalez-Aquino,J.C., Martinez,A., Licona-Cassani,C.. Translating biosynthetic gene cluster architecture into biosensor design for microbial natural product discovery.
Essays in Biochemistry, Jun 3 [Online ahead of print],
EBC20250015.
Artículo
79 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,W.I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N.. Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
ISME Communications,
6 (1),
ycag063.
*
Preprint
80 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,Wilson I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N.. Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
bioRxiv,
Preprint posted February 27.
*
Preprint
81 - Xolalpa-Aroche,A., Contreras-Peruyero,H., Delgado-Suarez,E.J., Hernandez-Mena,D.I., Moguel-Chin,W.I., Rivero-Cruz,J.F., Velarde,R.A., Ortiz-Vazquez,E., Rivero-Cruz,B.E., Lovaco-Flores,J.A., Rodriguez-Orduna,L., Licona-Cassani,C., Barona-Gomez,F., Selem-Mojica,N.. Genome-resolved metagenomics reveals a phylogenetically cohesive Acetilactobacillus-like species complex dominating stingless bee pot honey.
bioRxiv,
Preprint posted 27 February.
*
Artículo
82 - Alvarado-Pena,N., Munoz-Torrico,M., Narvaez-Diaz,L., Mejia-Ponce,P.M, Becerril-Vargas,E., Zuniga,J., Muniz-Salazar,R., Laniado-Laborin,R., Licona-Cassani,C., Soberon,X., Silva-Herzog,E.. Mycobacterium tuberculosis genomic surveillance in Mexico. Characterization of variants in drug resistance and efflux pump genes.
Frontiers in Microbiology,
16,
1666838.
Artículo
83 - Chimal-Munoz,M., Perez-Martinez,D.E., Bermudez-Hernandez,G.A., Mejia-Ponce,P.M., Licona-Cassani,C., Muniz-Salazar,R., Montero,H., Zenteno-Cuevas,R.. Whole-Genome Sequence Analysis to Assess Mutations in Efflux Pumps in Mycobacterium tuberculosis: The Influence in Drug Resistance.
Microorganisms,
13 (6),
1306.
*
Artículo
84 - Elakkya,M., Gonzalez-Salazar,L.A., Lopez-Reyes,K., Rebelo-Romao,I., Sousa,A., Godde,V., Niehaus,K., Thenappan,D.P., Vilchez,J.I., Paul,S., Licona-Cassani,C.. Comparative genomics and metabolomics reveal phytohormone production, nutrient acquisition, and osmotic stress tolerance in Azotobacter chroococcum W5.
Frontiers in Microbiology,
16,
1626016.
Artículo
85 - Gallardo-Camarena,M.V., Reverchon,F., Mendez-Bravo,A., Torres-Acosta,M.A., Licona-Cassani,C.. Control of avocado anthracnose by carposphere-associated Kosakonia cowanii VG1 for agricultural applications.
AMB Express,
15 (1).
*
Artículo
86 - Gallardo-Camarena,M.V., Torres-Acosta,M.A., Licona-Cassani,C.. Economic evaluation of large-scale production for Colletotrichum antagonists as biocontrol agents against anthracnose.
Journal of Chemical Technology and Biotechnology,
100 (5),
1117-1128.
*
Artículo
87 - Gamez-Valdez,J.S., Corona-Cervantes,K., Sanchez-Salguero,E.S., Alcorta-Garcia,M.R., Lopez-Villasenor,C.N., Carballo-Castaneda,R.A., Moreno-Ulloa,A., Lara-Diaz,V.J., Brunck,M.E.G., Licona-Cassani,C.. Analysis of human colostrum reveals differential co-occurrence networks of metabolites, microbiota and cytokines in maternal obesity.
Food & Function,
16 (14),
5900-5916.
*
Artículo
88 - Morey-Leon,G., Mejia-Ponce,P.M., Fernandez-Cadena,J.C, Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Fresia,P, Berna,L. Global epidemiology of Mycobacterium tuberculosis lineage 4 insights from Ecuadorian genomic data.
Scientific Reports,
15 (1).
*
Artículo
89 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Gonzalez-Valdez,J., Aguilar,O., Renard,C.M.G.C., Licona-Cassani,C.. Influence of molar ratio and pH on physicochemical characteristics of genipin-derived pigments formed at cold and mild temperatures.
Food Chemistry Advances,
7,
100983.
*
Artículo
90 - Ramos-Garcia,A.A., Mejia-Ponce,P.M., Salem-Mojica,N., Santos-Diaz,A., Martinez-Ledesma,E., Licona-Cassani,C.. FuNTB: a functional network clustering tool for the analysis of genome-wide genetic variants in Mycobacterium tuberculosis.
Bioinformatics,
41 (7),
btaf341.
Artículo
91 - Rodriguez-Orduna,L., Aguilar,C., Hernandez-Melgar,A.G., Arocha-Garza,H.F., Verdel-Aranda,K., Vazquez-Rodriguez,A., Lopez-Ribot,J.L., Moreno-Ulloa,A., Licona-Cassani,C.. Biodiscovery of Actinomycetota through metabolo-genomics reveals functional diversity across contrasting Mexican ecosystems.
Microbial Genomics,
11 (10),
001557 [corrigendum vol 12 (2)].
Artículo
92 - Salazar-Garcia,L.M., Damas-Ramos,L.C., Trejo-Alarcon,L.M., Rago,D., Ahonen,L., Cruz-Morales,P., Ponce-Noyola,P., Licona-Cassani,C.. CRISPR-driven enhanced hydrocarbon emulsification in an environmental Pseudomonas aeruginosa strain.
Microbial Cell Factories,
24 (1),
151.
Artículo
93 - Trejo-Alarcon,L.M., Cano-Prieto,C., Calheiros de Carvalho,A., Rago,D., Ahonen,L., Cruz-Morales,P., Licona-Cassani,C.. Integrative metabolo-genomics suggests a biosynthetic pathway for tetrangulol in Streptomyces sp. KL110A.
World Journal of Microbiology & Biotechnology,
41 (3).
*
Artículo
94 - Trejo-Alarcon,L.M., Cruz-Morales,P., Licona-Cassani,C.. Draft genome sequence of Streptomyces sp. CC302I with non-canonical biosynthetic gene clusters for codon-readthrough activity.
Microbiology Resource Announcements,
14 (2).
*
Artículo
95 - Zdouc,M.M., Blin,K., Louwen,N.L.L., Navarro,J., Loureiro,C., Bader,C.D., Bailey,C.B., Barra,L., Booth,T.J., Bozhuyuk,K.A.J., Cediel-Becerra,J.D.D., Charlop-Powers,Z., Chevrette,M.G., Chooi,Y.H., D'Agostino,P.M., de Rond T., Del Pup E., Duncan,K.R., Gu,W., Hanif,N., Helfrich,E.J.N., Jenner,M., Katsuyama,Y., Korenskaia,A., Krug,D., Libis,V., Lund,G.A., Mantri,S., Morgan,K.D., Owen,C., Phan,C.S., Philmus,B., Reitz,Z.L., Robinson,S.L., Singh,K.S., Teufel,R., Tong,Y., Tugizimana,F., Ulanova,D., Winter,J.M., Aguilar,C., Akiyama,D.Y., Al-Salihi,S.A.A., Alanjary,M., Alberti,F., Aleti,G., Alharthi,S.A., Rojo,M.Y.A., Arishi,A.A., Augustijn,H.E., Avalon,N.E., Avelar-Rivas,J.A., Axt,K.K., Barbieri,H.B., Barbosa,J.C.J., Barboza Segato,L.G., Barrett,S.E., Baunach,M., Beemelmanns,C., Beqaj,D., Berger,T., Bernaldo-Aguero,J., Bettenbuhl,S.M., Bielinski,V.A., Biermann,F., Borges,R.M., Borriss,R., Breitenbach,M., Bretscher,K.M., Brigham,M.W., Buedenbender,L., Bulcock,B.W., Cano-Prieto,C., Capela,J., Carrion,V.J., Carter,R.S., Castelo-Branco,R., Castro-Falcon,G., Chagas,F.O., Charria-Giron,E., Chaudhri,A.A., Chaudhry,V., Choi,H., Choi,Y., Choupannejad,R., Chromy,J., Donahey,M.S.C., Collemare,J., Connolly,J.A., Creamer,K.E., Crusemann,M., Cruz,A.A., Cumsille,A., Dallery,J.F., Damas-Ramos,L.C., Damiani,T., de Kruijff M., Martin,B.D., Sala,G.D., Dillen,J., Doering,D.T., Dommaraju,S.R., Durusu,S., Egbert,S., Ellerhorst,M., Faussurier,B., Fetter,A., Feuermann,M., Fewer,D.P., Foldi,J., Frediansyah,A., Garza,E.A., Gavriilidou,A., Gentile,A., Gerke,J., Gerstmans,H., Gomez-Escribano,J.P., Gonzalez-Salazar,L.A., Grayson,N.E., Greco,C., Gomez,J.E.G., Guerra,S., Flores,S.G., Gurevich,A., Gutierrez-Garcia,K., Hart,L., Haslinger,K., He,B., Hebra,T., Hemmann,J.L., Hindra,H., Hoing,L., Holland,D.C., Holme,J.E., Horch,T., Hrab,P., Hu,J., Huynh,T.H., Hwang,J.Y., Iacovelli,R., Iftime,D., Iorio,M., Jayachandran,S., Jeong,E., Jing,J., Jung,J.J., Kakumu,Y., Kalkreuter,E., Kang,K.B., Kang,S., Kim,W., Kim,G.J., Kim,H., Kim,H.U., Klapper,M., Koetsier,R.A., Kollten,C., Kovacs,A.T., Kriukova,Y., Kubach,N., Kunjapur,A.M., Kushnareva,A.K., Kust,A., Lamber,J., Larralde,M., Larsen,N.J., Launay,A.P., Le,N.T., Lebeer,S., Lee,B.T., Lee,K., Lev,K.L., Li,S.M., Li,Y.X., Licona-Cassani,C., Lien,A., Liu,J., Lopez,J.A.V., Machushynets,N.V., Macias,M.I., Mahmud,T., Maleckis,M., Martinez-Martinez,A.M., Mast,Y., Maximo,M.F., McBride,C.M., McLellan,R.M., Bhatt,K.M., Melkonian,C., Merrild,A., Metsa-Ketela,M., Mitchell,D.A., Muller,A.V., Nguyen,G.S., Nguyen,H.T., Niedermeyer,T.H.J., O'Hare,J.H., Ossowicki,A., Ostash,B.O., Otani,H., Padva,L., Paliyal,S., Pan,X., Panghal,M., Parade,D.S., Park,J., Parra,J., Rubio,M.P., Pham,H.T., Pidot,S.J., Piel,J., Pourmohsenin,B., Rakhmanov,M., Ramesh,S., Rasmussen,M.H., Rego,A., Reher,R., Rice,A.J., Rigolet,A., Romero-Otero,A., Rosas-Becerra,L.R., Rosiles,P.Y., Rutz,A., Ryu,B., Sahadeo,L.A., Saldanha,M., Salvi,L., Sanchez-Carvajal,E., Santos-Medellin,C., Sbaraini,N., Schoellhorn,S.M., Schumm,C., Sehnal,L., Selem,N., Shah,A.D., Shishido,T.K., Sieber,S., Silviani,V., Singh,G., Singh,H., Sokolova,N., Sonnenschein,E.C., Sosio,M., Sowa,S.T., Steffen,K., Stegmann,E., Streiff,A.B., Struder,A., Surup,F., Svenningsen,T., Sweeney,D., Szenei,J., Tagirdzhanov,A., Tan,B., Tarnowski,M.J.. MIBiG 4.0: advancing biosynthetic gene cluster curation through global collaboration.
Nucleic Acids Research,
53 (D1),
gkae1115,
D678-D690.
Memoria in extenso
96 - Ramos-Garcia, A. A., Licona-Cassani, C., Santos-Diaz, A.. Multi-Scale Genomic Signatures and Machine Learning for Enhanced Prediction of Antimicrobial Resistance. IEEE 38th International Symposium on Computer-Based Medical Systems (CBMS), Vol. 00, 1-4 - June 2025.
1-4,
Los Alamitos: IEEE Computer Society.
*
Artículo
97 - Aguilar,C., Alwali,A., Mair,M., Rodriguez-Orduna,L., Contreras-Peruyero,H., Modi,R., Roberts,C., Selem-Mojica,N., Licona-Cassani,C., Parkinson,E.I.. Actinomycetota bioprospecting from ore-forming environments.
Microbial Genomics,
10 (5),
001253.
*
Artículo
98 - Alwali,A.Y., Santos,D., Aguilar,C., Birch,A., Rodriguez-Ordunea,L., Roberts,C.B., Modi,R., Licona-Cassani,C., Parkinson,E.I.. Discovery of Streptomyces species CS-62, a novel producer of the Acinetobacter baumannii selective antibiotic factumycin.
Journal of Industrial Microbiology & Biotechnology,
51,
kuae014.
*
Artículo
99 - Bermudez-Hernandez,G.A., Perez-Martinez,D., Ortiz-Leon,M.C., Muniz-Salazar,R., Licona-Cassani,C., Zenteno-Cuevas,R.. Mutational Dynamics Related to Antibiotic Resistance in M. tuberculosis Isolates from Serial Samples of Patients with Tuberculosis and Type 2 Diabetes Mellitus.
Microorganisms,
12 (2).
*
Artículo
100 - Contreras-Peruyero,H., Guerrero-Flores,S., Zirion-Martinez,C., Mejia-Ponce,P.M., Navarro-Miranda,M., Lovaco-Flores,J.A., Ibarra-Rodriguez,J.M., Pashkov,A., Licona-Cassani,C., Selem-Mojica,N.. Meeting the challenge of genomic analysis: a collaboratively developed workshop for pangenomics and topological data analysis.
Bioinformatics Advances,
4 (1).
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Artículo
101 - Deantas-Jahn,C., Mendoza,S.N., Licona-Cassani,C., Orellana,C., Saa,P.A.. Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation.
Applied Microbiology and Biotechnology,
108 (1),
310.
*
Artículo
102 - Lozano-Aguirre,L., Avitia,M., Lappe-Oliveras,P., Licona-Cassani,C., Cevallos,M.A., Le Borgne,S.. Draft genomes of four Kluyveromyces marxianus isolates retrieved from the elaboration process of henequen (Agave fourcroydes) mezcal.
Microbiology Resource Announcements,
13 (3).
*
Artículo
103 - Mejia-Ponce,P.M., Chimal-Munoz,M., Zenteno-Cuevas,R., Licona-Cassani,C.. Draft genome sequences of 12 Mycolicibacterium fortuitum isolates from human pulmonary infections in Veracruz, Mexico.
Microbiology Resource Announcements,
13 (4).
*
Artículo
104 - Rodriguez-Orduna,L., Lara-Diaz,V.J., Alcorta-Garcia,M.R., Lopez-Villasenor,C.N., Licona-Cassani,C.. Genome sequences of 70 multidrug-resistant Gram-negative isolates in high-risk neonates in the Northeast of Mexico.
Microbiology Resource Announcements,
13 (9).
*
Artículo
105 - Zuffa,S., Schmid,R., Bauermeister,A., Gomes,P., Caraballo-Rodriguez,A.M., El Abiead,Y., Aron,A.T., Gentry,E.C., Zemlin,J., Meehan,M.J., Avalon,N.E., Cichewicz,R.H., Buzun,E., Terrazas,M.C., Hsu,C.Y., Oles,R., Ayala,A.V., Zhao,J., Chu,H., Kuijpers,M.C.M., Jackrel,S.L., Tugizimana,F., Nephali,L.P., Dubery,I.A., Madala,N.E., Moreira,E.A., Costa-Lotufo,L.V., Lopes,N.P., Rezende-Teixeira,P., Jimenez,P.C., Rimal,B., Patterson,A.D., Traxler,M.F., Pessotti,R.D.C., varado-Villalobos,D., Tamayo-Castillo,G., Chaverri,P., Escudero-Leyva,E., Quiros-Guerrero,L.M., Bory,A.J., Joubert,J., Rutz,A., Wolfender,J.L., Allard,P.M., Sichert,A., Pontrelli,S., Pullman,B.S., Bandeira,N., Gerwick,W.H., Gindro,K., Massana-Codina,J., Wagner,B.C., Forchhammer,K., Petras,D., Aiosa,N., Garg,N., Liebeke,M., Bourceau,P., Kang,K.B., Gadhavi,H., de Carvalho,L.P.S., Silva dos Santos,M., Perez-Lorente,A.I., Molina-Santiago,C., Romero,D., Franke,R., Bronstrup,M., Vera Ponce de Leon,A., Pope,P.B., La Rosa,S.L., La Barbera,G., Roager,H.M., Laursen,M.F., Hammerle,F., Siewert,B., Peintner,U., Licona-Cassani,C., Rodriguez-Orduna,L., Rampler,E., Hildebrand,F., Koellensperger,G., Schoeny,H., Hohenwallner,K., Panzenboeck,L., Gregor,R., O'Neill,E.C., Roxborough,E.T., Odoi,J., Bale,N.J., Ding,S., Sinninghe Damste,J.S., Guan,X.L., Cui,J.J., Ju,K.S., Silva,D.B., Silva,F.M.R., da Silva,G.F., Koolen,H.H.F., Grundmann,C., Clement,J.A., Mohimani,H., Broders,K., McPhail,K.L., Ober-Singleton,S.E., Rath,C.M., McDonald,D., Knight,R., Wang,M., Dorrestein,P.C.. microbeMASST: a taxonomically informed mass spectrometry search tool for microbial metabolomics data.
Nature Microbiology,
9 (2),
336-345.
*
Artículo
106 - Gonzalez-Salazar,L.A., Quezada,M., Rodriguez-Orduna,L., Ramos-Aboites,H., Capon,R.J., Souza-Saldivar,V., Barona-Gomez,F., Licona-Cassani,C.. Biosynthetic novelty index reveals the metabolic potential of rare actinobacteria isolated from highly oligotrophic sediments.
Microbial Genomics,
9 (1).
*
Artículo
107 - Mejia-Ponce,P.M., Ramos-Gonzalez,E.J., Ramos-Garcia,A.A., Lara-Ramirez,E.E., Soriano-Herrera,A.R., Medellin-Luna,M.F., Valdez-Salazar,F., Castro-Garay,C.Y., Nunez-Contreras,J.J., De Donato-Capote,M., Sharma,A., Castaneda-Delgado,J.E., Zenteno-Cuevas,R., Enciso-Moreno,J.A., Licona-Cassani,C.. Genomic epidemiology analysis of drug-resistant Mycobacterium tuberculosis distributed in Mexico.
PLoS ONE,
18 (10 October).
*
Artículo
108 - Morey-Leon,G., Mejia-Ponce,P.M., Granda Pardo,J.C., Munoz-Mawyin,K., Fernandez-Cadena,J.C., Garcia-Moreira,E., Andrade-Molina,D., Licona-Cassani,C., Berna,L.. A precision overview of genomic resistance screening in Ecuadorian isolates of Mycobacterium tuberculosis using web-based bioinformatics tools.
PLoS ONE,
18 (12 December).
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Artículo nacional
109 - Perez-Cabeza de Vaca,R., Cortes-Espinosa,T., Maldonado-Arriaga,B., Suarez-Cuenca,J.A., Sandoval-Jimenez,S., Mondragon-Teran,P., Navarro-Gerrard,C., Paredes-Amenabar,C., Corazon-Trujillo de la Fuente,K., Romero-Lozania,J.A., Lopez-Gomez,J.G., Licona-Cassani,C.. Vedolizumab como terapia primaria en colitis ulcerosa y en la enfermedad de Crohn de moderada a grave: revisión y metaanálisis.
Revista mexicana de enfermedades inflamatorias inmunomediadas,
95 (2),
31-39.
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Artículo
110 - Ramos-de-la-Pena,A.M., Santana-Reynoso,A., Renard,C.M.G.C., Contreras-Esquivel,J.C., Rodriguez-Rodriguez,J., Aguilar,O., Gonzalez-Valdez,J., Licona-Cassani,C.. Physical characterization of genipin complexes coupled with multivariate data analysis to assess formed pigments.
Colloids and Surfaces A: Physicochemical and Engineering Aspects,
673,
131774.
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Artículo
111 - Rodriguez-Sanchez,A.C., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Cumsille,A., Undabarrena,A., Camara,B., Selem-Mojica,N., Licona-Cassani,C.. Phylogenetic classification of natural product biosynthetic gene clusters based on regulatory mechanisms.
Frontiers in Microbiology,
14.
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Artículo
112 - Urrutia-Baca,V.H., Chuck-Hernandez,C., Gutierrez-Uribe,J., Ramos-Parra,P.A., Licona-Cassani,C.. Development and validation of a versatile analytical method for absolute quantification of seven oligosaccharides in human, bovine, and goat milk.
Heliyon,
9 (11).
*
Internacional
113 - Perez-Martinez,D., Mejia-Ponce,P., Licona-Cassani,C., de Igartua,E., Bermudez,G., Viveros,D., Zenteno-Cuevas,R.. Drug Resistance in Tuberculosis: Mechanisms, Diagnosis, New Responses, and the Need for an Integrated Approach. Integrated Science.
331-359,
11.
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114 - Rezaei, Nima, Hosseini, Nastaran-Sadat, Saghazadeh, Amene, Fateh, Abolfazl, Duse, Adriano, Ahmad, Aijaz, Braley, Alexander E., Tahta, Alican, Kamboj, Alisha, Khan, Amer Hayat, Coelho, Ana Cláudia, Fuso, Andrea, Varón, Andrés, Trajman, Anete, Saxena, Anil Kumar, Ganeshpurkar, Ankit, Casapao, Anthony M., Tkachenko, Anton, Devnikar, Anushka V., Moshiri, Arfa, Muñoz-Barrutia, Arrate, Dasgupta, Arunava, Natarajan, Arvind, Gupta, Ashish, Coyne, Ashlan J. Kunz, Jordan, Ashly E., Kumar, Ashok, Ergeshov, Atadzhan, Pourakbari, Babak, Joshi, Basant, Chavarro-Portillo, Bibiana, Soto, Carlos Y., Kanipe, Carly, Schmidt, Christiane Mello, Cox, Christophe, Gómez-Cruz, Clara, Cardoso, Claudete Aparecida Araújo, Sant´Anna, Clemax Couto, Johnson, Courtney, Rodríguez-Silva, Cristhian N., Rosales, Cristian, Licona-Cassani, Cuauhtémoc, Fast, Cynthia D., Pérez-Martínez, Damián, Pizzol, Damiano, Perlman, David C., Philips, Dennis, Viveros, Diana, Fisher, Dina A., Butov, Dmytro, Egelund, Eric F., de Igartua, Everest, Bhatt, Garima, Mgode, Georgies, Quaglio, Gianluca, Putoto, Giovanni, Mini, G. K., Thomas-Richardson, Govind, Wylie, Greg, dos Santos Fernandes, Guilherme Felipe, Bermúdez, Gustavo, Quintas, Hélder, Verma, Himanshu, Eoh, Hyungjin, Putera, Ikhwanuliman, Sivokozov, Ilya, Pires, Isabel, Lee, Jae Jin, Lombard, Jason E., dos Santos, Jean Leandro, Zellweger, Jean-Pierre, Thomas-Richardson, Jenu, Lordson, Jinbert, Prates, João Lucas, Cervantes, Jorge, Porcel, José M., Vaquero, Juan José, Prada, Justina, Kamboj, Kamal, Tabbara, Khalid F., Mussie, Kirubel Manyazewal, Patel, Krupesh, Porcel, Laura, Fiebig, Lena, Mohan, Malu, Yadav, Mange Ram, López-R, Marcela, Correia-Neves, Margarida, da Conceição Fontes, Maria, de Fátima Pombo Bazhuni Sant´Anna, Maria, Cañadas-Ortega, Marina, Singh, Meenakshi, Lause, Michael, Maya-Hoyos, Milena, Omrani, Mir Davood, Palmer, Mitchell V., Ahmad, Mohammad Naiyaz, Seid, Mohammed Assen, Chauhan, Monica, Saxena, Mridula, Marimani, Musa, Srinivas, Nanduri, Beyene, Negussie, Arenas, Nelson E., Cardoso, Nicole, Oliveira, Olena, Silakari, Om, Inlamea, Osvaldo, Tanriverdi, Özgür, Boggiatto, Paola M., Santos, Paola, Mejía-Ponce, Paulina, Soares, Pedro, Sell, Philip, Murumkar, Prashant R., Devanandan, Praveen, Zheng, Qi, Lim, Rachel K., Aurílio, Rafaela Baroni, Ghuge, Rahul B., Barot, Rahul R., Rahul,, Puvvada, Ranadheer Chowdary, Duarte, Raquel, Singh, Ravi, Sinha, Richa, La Distia Nora, Rina, Burny, Robert, Zenteno-Cuevas, Roberto, Mali, Sagar, Shoughy, Samir S., Tarashi, Samira, Mishra, Sapna, Malasala, Satyaveni, Mamishi, Setareh, Siadat, Seyed Davar, Choudhary, Shalki, Mahmoudi, Shima, Chopra, Sidharth, Nandi, Sisir, Faisal, Sobia, Goel, Sonu, Huszár, Stanislav, Field, Stephen K., Singh, Sushil Kumar, Rito, Teresa, Butova, Tetiana, Manning, Thomas, van der Werf, Tjip S., Myasoedov, Valeriy, Vásquez, Vanessa, Muthukumar, Vijey Aanandhi, Singh, Vinayak, Hall, Walter A., Hikmahwati, Wandya, Turgut, Yasar Baris, Thaker, Yatri, Kawabata, Yoshinori, de Reus, Yvette A.. Tuberculosis: Integrated Studies for a Complex Disease 2050. Tuberculosis: Integrated Studies for a Complex Disease.
1063-1098,
Cham: Springer International Publishing.
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Artículo
115 - Perez-Martinez,D.E., Bermudez-Hernandez,G.A., Madrazo-Moya,C.F., Cancino-Munoz,I., Montero,H., Licona-Cassani,C., Muniz-Salazar,R., Comas,I., Zenteno-Cuevas,R.. SNPs in Genes Related to DNA Damage Repair in Mycobacterium Tuberculosis: Their Association with Type 2 Diabetes Mellitus and Drug Resistance.
Genes,
13 (4).
*
Artículo
116 - Pineiro-Salvador,R., Vazquez-Garza,E., Cruz-Cardenas,J.A., Licona-Cassani,C., Garcia-Rivas,G., Moreno-Vasquez,J., Alcorta-Garcia,M.R., Lara-Diaz,V.J., Brunck,M.E.G.. A cross-sectional study evidences regulations of leukocytes in the colostrum of mothers with obesity.
BMC Medicine,
20 (1).
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Artículo
117 - Thenappan,D.P., Gonzalez-Salazar,L.A., Licona-Cassani,C., Kannepalli,A.. Draft Genome Sequence of Streptomyces sp. Strain FB2, Isolated from Rice Rhizosphere.
Microbiology Resource Announcements,
11 (6).
*
Artículo
118 - Enriquez-Ochoa,D., Melendez-Martinez,D., Aguilar-Yanez,J.M., Licona-Cassani,C., Mayolo-Deloisa,K.. Development of aqueous two-phase systems-based approaches for the selective recovery of metalloproteases and phospholipases A2 toxins from Crotalus molossus nigrescens venom.
Bioresources and Bioprocessing,
8 (1).
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Artículo
119 - Flores-Gatica,M., Castaneda-Aponte,H., Gil-Garzon,M.R., Mora-Galvez,L.M., Banda-Magana,M.P., Jauregui-Jauregui,J.A., Torres-Acosta,M.A., Mayolo-Deloisa,K., Licona-Cassani,C.. Primary recovery of hyaluronic acid produced in Streptococcus equi subsp. zooepidemicus using PEG?_"citrate aqueous two-phase systems.
AMB Express,
11 (1),
123.
*
Artículo
120 - Gamez-Valdez,J.S., Garcia-Mazcorro,J.F., Montoya-Rincon,A.H., Rodriguez-Reyes,D.L., Jimenez-Blanco,G., Alanis-Rodriguez,M.T., Perez-Cabeza de Vaca,R., Alcorta-Garcia,M.R., Brunck,M., Lara-Diaz,V.J., Licona-Cassani,C.. Differential analysis of the bacterial community in colostrum samples from women with gestational diabetes mellitus and obesity.
Scientific Reports,
11 (1).
*
Artículo
121 - Jimenez-Ruano,A.C., Madrazo-Moya,C.F., Cancino-Munoz,I., Mejia-Ponce,P.M., Licona-Cassani,C., Comas,I., Muniz-Salazar,R., Zenteno-Cuevas,R.. Whole genomic sequencing based genotyping reveals a specific X3 sublineage restricted to Mexico and related with multidrug resistance.
Scientific Reports,
11 (1),
1870.
*
Artículo
122 - Maldonado-Arriaga,B., Sandoval-Jimenez,S., Rodriguez-Silverio,J., Alcaraz-Estrada,S.L., Cortes-Espinosa,T., Perez-Cabeza de Vaca,R., Licona-Cassani,C., Gomez-Valdez,J.S., Shaw,J., Mondragon-Teran,P., Hernandez-Cortez,C., Suarez-Cuenca,J.A., Castro-Escarpulli,G.. Gut dysbiosis and clinical phases of pancolitis in patients with ulcerative colitis.
Microbiologyopen,
10 (2).
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Artículo
123 - Torres-Acosta,M.A., Castaneda-Aponte,H.M., Mora-Galvez,L.M., Gil-Garzon,M.R., Banda-Magana,M.P., Marcellin,E., Mayolo-Deloisa,K., Licona-Cassani,C.. Comparative Economic Analysis Between Endogenous and Recombinant Production of Hyaluronic Acid.
Frontiers in Bioengineering and Biotechnology,
9.
*
124 - Perez-Cabeza de Vaca, R., Vairappan, B., Cortes-Espinoza, T., Suarez-Cuenca, J. A., Licona-Cassani, C., Maldonado-Arriaga, B., Navarro-Gerrard, C., Morgan-Penagos, D. S., Mondragon-Teran, P., Chagoya De Sanchez, V.. Spontaneous Bacterial Peritonitis: Physiopathological Mechanism and Clinical Manifestations. Advances in Hepatology.
London: Intech Open.
*
Revisión
125 - Avila-Rodriguez,M.I., Melendez-Martinez,D., Licona-Cassani,C., Aguilar-Yanez,J.M., Benavides,J., Sanchez,M.L.. Practical context of enzymatic treatment for wound healing: A secreted protease approach (review).
Biomedical Reports,
13 (1),
3-14.
*
Artículo
126 - Gallegos-Lopez,S., Mejia-Ponce,P.M., Gonzalez-Salazar,L.A., Rodriguez-Orduna,L., Souza-Saldivar,V., Licona-Cassani,C.. Draft Genome Sequence of Streptomyces sp. Strain C8S0, isolated from a highly oligotrophic sediment.
Microbiology Resource Announcements,
9 (14).
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Artículo
127 - Garcia-Mazcorro,J.F., Kawas,J.R., Licona-Cassani,C., Mertens-Talcott,S., Noratto,G.. Different analysis strategies of 16S rRNA gene data from rodent studies generate contrasting views of gut bacterial communities associated with diet, health and obesity.
PeerJ,
8.
*
Artículo
128 - Garza-Aguilar,S.M., Garcia-Salinas,C., Mejia-Ponce,P.M, Licona-Cassani,C, Ramos-Parra,P.A, Diaz de la Garza,R.I.. The complexity of folate polyglutamylation in plants: Postharvest ripening and ethylene modulate polyglutamylated profiles in climacteric fruits plus systematic analysis of the glutamyl tail-editing enzymes.
Scientia Horticulturae,
273 (109588).
*
Artículo
129 - Melendez-Martinez,D., Plenge-Tellechea,L.F., Gatica-Colima,A., Cruz-Perez,M.S., Aguilar-Yanez,J.M., Licona-Cassani,C.. Functional mining of the crotalus spp. venom protease repertoire reveals potential for chronic wound therapeutics.
Molecules,
25 (15).
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Artículo
130 - Orellana,C.A., Zaragoza,N.E., Licona-Cassani,C., Palfreyman,R.W., Cowie,N., Moonen,G., Moutafis,G., Power,J., Nielsen,L.K., Marcellin,E.. Time-course transcriptomics reveals that amino acids catabolism plays a key role in toxinogenesis and morphology in Clostridium tetani.
Journal of Industrial Microbiology & Biotechnology,
47 (12),
1059-1073.
*
Preprint
131 - Aguilar,C., Verdel-Aranda,K., Ramos-Aboites, H.E., Morales, M.A., Licona-Cassani,C., Barona-Gómez, F.. Convergent evolution of Streptomyces protease inhibitors involving a tRNA-mediated condensation-minus NRPS.
bioRxiv,
Posted October 28.
Artículo
132 - Khalil,Z.G., Cruz-Morales,P., Licona-Cassani,C., Marcellin,E., Capon,R.J.. Inter-Kingdom beach warfare: Microbial chemical communication activates natural chemical defences.
ISME Journal,
13 (1),
147-158.
*
Artículo
133 - Cruz-Morales,P., Ramos-Aboites,H.E., Licona-Cassani,C., Selem-Mojica,N., Mejia-Ponce,P.M., Souza-Saldivar,V., Barona-Gomez,F.. Actinobacteria phylogenomics, selective isolation from an iron oligotrophic environment and siderophore functional characterization, unveil new desferrioxamine traits.
FEMS Microbiology Ecology,
93 (9).
*
Artículo
134 - Quezada,M., Licona-Cassani,C., Cruz-Morales,P., Salim,A.A., Marcellin,E., Capon,R.J., Barona-Gomez,F.. Diverse cone-snail species harbor closely related Streptomyces species with conserved chemical and genetic profiles, including polycyclic tetramic acid macrolactams.
Frontiers in Microbiology,
8 (NOV).
*
Artículo
135 - Steffani-Vallejo,J.L., Zuniga,C., Cruz-Morales,P., Lozano,L., Morales,M., Licona-Cassani,C., Revah,S., Utrilla,J.. Draft genome sequence of sphingobacterium sp. CZ-UAM, isolated from a methanotrophic consortium.
Genome Announcements,
5 (33).
*
Artículo
136 - Licona-Cassani,C., Steen,J.A., Zaragoza,N.E., Moonen,G., Moutafis,G., Hodson,M.P., Power,J., Nielsen,L.K., Marcellin,E.. Tetanus toxin production is triggered by the transition from amino acid consumption to peptides.
Anaerobe,
41,
113-124.
*
Artículo
137 - Marcellin,E., Behrendorff,J.B., Nagaraju,S., Detissera,S., Segovia,S., Palfreyman,R.W., Daniell,J., Licona-Cassani,C., Quek,L.E., Speight,R., Hodson,M.P., Simpson,S.D., Mitchell,W.P., Kopke,M., Nielsen,L.K.. Low carbon fuels and commodity chemicals from waste gases-systematic approach to understand energy metabolism in a model acetogen.
Green Chemistry,
18 (10),
3020-3028.
*
Artículo
138 - Tierrafria,V.H., Licona-Cassani,C., Maldonado-Carmona,N., Romero-Rodriguez,A., Centeno-Leija,S., Marcellin,E., Rodriguez-Sanoja,R., Ruiz-Villafan,B., Nielsen,L.K., Sanchez,S.. Deletion of the hypothetical protein SCO2127 of Streptomyces coelicolor allowed identification of a new regulator of actinorhodin production.
Applied Microbiology and Biotechnology,
100 (21),
9229-9237 [Correction 104 (8) 3687].
*
Revisión
139 - Licona-Cassani,C., Cruz-Morales,P., Manteca,A., Barona-Gomez,F., Nielsen,L.K., Marcellin,E.. Systems Biology Approaches to Understand Natural Products Biosynthesis.
Frontiers in Bioengineering and Biotechnology,
3.
*
Artículo
140 - Navone,L., Macagno,J.P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Gramajo,H., Rodriguez,E.. AllR controls the expression of Streptomyces coelicolor allantoin pathway genes.
Applied and Environmental Microbiology,
81 (19),
6649-6659.
*
Artículo
141 - Liao,C., Rigali,S., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Ye,B.C.. Control of chitin and N-acetylglucosamine utilization in Saccharopolyspora erythraea.
Microbiology (United Kingdom),
160 (9),
1914-1928.
*
Artículo
142 - Licona-Cassani,C., Lara,A.R., Cabrera-Valladares,N., Escalante,A., Hernandez-Chavez,G., Martinez,A., Bolivar,F., Gosset,G.. Inactivation of Pyruvate Kinase or the Phosphoenolpyruvate: Sugar Phosphotransferase System Increases Shikimic and Dehydroshikimic Acid Yields from Glucose in Bacillus subtilis.
Journal of Molecular Microbiology and Biotechnology,
24 (1),
37-45.
Artículo
143 - Licona-Cassani,C., Lim,S., Marcellin,E., Nielsen,L.K.. Temporal dynamics of the saccharopolyspora erythraea phosphoproteome.
Molecular and Cellular Proteomics,
13 (5),
1219-1230.
*
Artículo
144 - Navone,L., Casati,P., Licona-Cassani,C., Marcellin,E., Nielsen,L.K., Rodriguez,E., Gramajo,H.. Allantoin catabolism influences the production of antibiotics in Streptomyces coelicolor.
Applied Microbiology and Biotechnology,
98 (1),
351-360.
*
Artículo
145 - Marcellin,E., Licona-Cassani,C., Mercer,T.R., Palfreyman,R.W., Nielsen,L.K.. Re-annotation of the Saccharopolyspora erythraea genome using a systems biology approach.
BMC Genomics,
14 (1).
*
Artículo
146 - Marcellin,E., Mercer,T.R., Licona-Cassani,C., Palfreyman,R.W., Dinger,M.E., Steen,J.A., Mattick,J.S., Nielsen,L.K.. Saccharopolyspora erythraea's genome is organised in high-order transcriptional regions mediated by targeted degradation at the metabolic switch.
BMC Genomics,
14 (1).
*
Artículo
147 - Licona-Cassani,C., Marcellin,E., Quek,L.E., Jacob,S., Nielsen,L.K.. Reconstruction of the Saccharopolyspora erythraea genome-scale model and its use for enhancing erythromycin production.
Antonie Van Leeuwenhoek,
102 (3),
493-502.
*
Artículo
148 - Utrilla,J., Licona-Cassani,C., Marcellin,E., Gosset,G., Nielsen,L.K., Martinez,A.. Engineering and adaptive evolution of Escherichia coli for d-lactate fermentation reveals GatC as a xylose transporter.
Metabolic Engineering,
14 (5),
469-476.