Almagro JC, Martinez L, Smith SL, Alagon A, Estevez J, Paniagua J. (2006). Analysis of the horse V(H) repertoire and comparison with the human IGHV germline genes, and sheep, cattle and pig V(H) sequences. Mol Immunol. 43: 1836-1845. (Abstract)

Hwang, W.Y., Almagro, J.C., Buss, T.N., Tan, P., Foote, J. (2005). Use of human germline genes in a CDR homology-based approach to antibody humanization. Methods. 36: 35-42. (Abstract)

Almagro, J.C. (2004). Identification of differences in the specificity-determining residues of antibodies that recognize antigens of different size: implications for the rational design of antibody repertoires. J. Mol. Recognit. 17: 132-143. (Abstract)

Rojas, G., Almagro, J.C., Acevedo, B., Gavilondo, J.V. (2002). Phage antibody fragments library combining a single human light chain variable region with immune mouse heavy chain variable regions. J. Biotechnol. 94: 287-298. (Abstract)

Manoutcharian, K., Gevorkian, G., Cano, A., Almagro, J.C. (2001). Phage displayed biomolecules as preventive and therapeutic agents. Curr. Pharm. Biotechnol. 2: 217-223. (Review). (Abstract)

Ramirez-Benitez, M.C., Moreno-Hagelsieb, G., Almagro, J.C. (2001). VIR.II: a new interface with the antibody sequences in the Kabat database. Biosystems. 61: 125-131. (Abstract)

Ramirez-Benitez, M.C., Almagro, J.C. (2001). Analysis of antibodies of known structure suggests a lack of correspondence between residues in contact with the antigens and those modified by somatic hypermutation. Proteins. 45: 199-206. (Abstract)

Almagro, J.C., Hernandez, I., Ramirez, M.C., Vargas-Madrazo, E. (1998). Structural differences between the repertoires of mouse and humans germline genes and their evolutionary implications. Immunogenetics. 47: 355-363. (Abstract)

Vorobjev, Y.N., Almagro, J.C., Hermans, J. (1998). Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model. Proteins. 32: 399-413. (Abstract)

Almagro J.C., Hernandez, I., del Carmen Ramirez M., Vargas-Madrazo E. (1997). The differences between the structural repertoires of VH germ-line gene segments of mice and humans: implication for the molecular mechanism of the immune response. Mol. Immunol. 34: 1199-1214. (Abstract)

Lara-Ochoa, F., Almagro, J.C., Vargas-Madrazo, E., Conrad, M. (1996). Antibody-antigen recognition: a canonical structure paradigm. J. Mol. Evol. 43: 678-684. (Abstract)

Almagro, J.C., Dominguez-Martinez, V., Lara-Ochoa F., Vargas-Madrazo, E. (1996). Structural repertoire in VL pseudogenes of immunoglobulins: comparison with functional germline genes and amino acid sequences. Immunogenetics. 43: 92-96. (Report)

Vargas-Madrazo, E., Lara-Ochoa, F., Almagro, J.C. (1995). Canonical structures repertoire of the antigen-binding site of immunoglobulins suggest strong geometrical restrictions associated to the mechanism of immune recognition. J. Mol. Biol. 254: 497-504. (Abstract)

Vargas-Madrazo, E., Almagro, J.C., Lara-Ochoa, F. (1995). Structural repertoire in VH pseudogenes of immunoglobulins: comparison with human germline genes and human amino acid sequences. J. Mol. Biol. 246: 74-81. (Abstract)

Almagro, J.C., Vargas-Madrazo, E., Lara-Ochoa, F., Horjales, E. (1995). Molecular modeling of a T-cell receptor bound to a major histocompatibility complex molecule: Implications for T-cell recognition. Protein Sci. 4: 1708-1717. (Abstract)

Almagro, J.C., Zenteno, R., Vargas-Madrazo, E., Lara-Ochoa, F. (1995). Variability analysis of the T-cell receptors using three variability indexes. Int. J. Pept. Protein. Res. 45: 180-186. (Abstract)

Almagro, J.C., Vargas-Madrazo, E., Zenteno-Cuevas, R., Hernandez-Mendiola, V., Lara-Ochoa, F. (1995). VIR: a computational tool for analysis of immunoglobulin sequences. Biosystems. 35: 25-32. (Abstract)

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