Instituto de Biotecnologia UNAM

IBT-UNAM : Dr. Ernesto Perez Rueda

Dr.

Dr. Ernesto Perez Rueda


Investigador Adscrito al Departamento

Tutor de Maestría y Doctorado

Nivel I del SNI

Ingeniería Celular y Biocatálisis

Página Personal

email: erueda@ibt.unam.mx

Teléfonos

Laboratorio +52 (777) 329-1777 ext 38306.
desde la CDMX 562-27777 ext 38306

red UNAM 38306



Publicaciones recientes

Avila-Mendoza,J. Perez-Rueda,E. Urban-Sosa,V. Carranza,M. Martinez-Moreno,C.G. Luna,M. Aramburo,C. 2018. Characterization and distribution of GHRH, PACAP, TRH, SST and IGF1 mRNAs in the green iguana General and Comparative Endocrinology, 255, 90-101.

Martinez-Nunez,M.A. Rodriguez-Escamilla,Z. Rodriguez-Vazquez,K. Perez-Rueda,E. 2017. Tracing the Repertoire of Promiscuous Enzymes along the Metabolic Pathways in Archaeal Organisms Life (Basel), 7, .

Rivera-Gomez,N. Martinez-Nunez,M.A. Pastor,N. Rodriguez-Vazquez,K. Perez-Rueda,E. 2017. Dissecting the protein architecture of DNA-binding transcription factors in bacteria and archaea Microbiology, 163, 1167-1178.

Casella,L.G. Weiss,A. Perez-Rueda,E. Ibarra,J.A. Shaw,L.N. 2017. Towards the complete proteinaceous regulome of Acinetobacter baumannii Microbial Genomics, 3, mgen000107.

Brambila-Tapia,A.J.L. Perez-Rueda,E. Barrios,H. Davalos-Rodriguez,N.O. Davalos-Rodriguez,I.P. Cardona-Munoz,E.G. Salazar-Paramo,M. 2017. Identification of beta-Lactamases and beta-Lactam-Related Proteins in Human Pathogenic Bacteria using a Computational Search Approach Current Microbiology, 74, 915-920.

Apolinar-Hernandez,M.M. Pena-Ramirez,Y.J. Perez-Rueda,E. Canto-Canche,B.B. De Los Santos-Briones,C. O'Connor-Sanchez,A. 2016. Identification and in silico characterization of two novel genes encoding peptidases S8 found by functional screening in a metagenomic library of Yucatan underground water Gene, 593, 154-161.

Reyes-Perez,A. Vargas,M.D. Hernandez,M. Aguirre-von-Wobeser,E. Perez-Rueda,E. Encarnacion,S. 2016. Transcriptomic analysis of the process of biofilm formation in Rhizobium etli CFN42 Archives of Microbiology, 198, 847-860.

Martinez-Nunez,M.A. Perez-Rueda,E. 2016. Do lifestyles influence the presence of promiscuous enzymes in bacteria and Archaea metabolism? Sustainable Chemical Processes, 4, 1-5.

Brambila-Tapia,A.J. Poot-Hernandez,A.C. Perez-Rueda,E. Rodriguez-Vazquez,K. 2016. Identification of DNA Methyltransferase Genes in Human Pathogenic Bacteria by Comparative Genomics Indian Journal of Microbiology, 56, 134-141.

Gama-Castro,S. Salgado,H. Santos-Zavaleta,A. Ledezma-Tejeida,D. Muniz-Rascado,L. Garcia-Sotelo,J.S. Alquicira-Hernandez,K. Martinez-Flores,I. Pannier,L. Castro-Mondragon,J.A. Medina-Rivera,A. Solano-Lira,H. Bonavides-Martinez,C. Perez-Rueda,E. Alquicira-Hernandez,S. Porron-Sotelo,L. Lopez-Fuentes,A. Hernandez-Koutoucheva,A. Moral-Chavez,V.D. Rinaldi,F. Collado-Vides,J. 2016. RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond Nucleic Acids Research, 44, 133-143.

Poot-Hernandez,A.C. Rodriguez-Vazquez,K. Perez-Rueda,E. 2015. The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria BMC Genomics, 16, 957.

Perez-Rueda,E. Ibarra,J.A. 2015. Distribution of putative xenogeneic silencers in prokaryote genomes Computational Biology and Chemistry, 58, 167-172.

Martinez-Nunez,M.A. Rodriguez-Vazquez,K. Perez-Rueda,E. 2015. The lifestyle of prokaryotic organisms influences the repertoire of promiscuous enzymes Proteins: Structure, Function and Bioinformatics, 83, 1625-1631.

Perez-Rueda,E. Tenorio-Salgado,S. Huerta-Saquero,A. Balderas-Martinez,Y. Moreno-Hagelsieb,G. 2015. The functional landscape bound to the transcription factors of Escherichia coli K-12 Computational Biology and Chemistry, 58, 93-103.

Ortegon,P. Poot-Hernandez,A.C. Perez-Rueda,E. Rodriguez-Vazquez,K. 2015. Comparison of Metabolic Pathways in Escherichia coli by Using Genetic Algorithms Computational and Structural Biotechnology Journal, 13, 277-285.

Pastor,N. Davila,S. Perez-Rueda,E. Segovia,L. Martinez-Anaya,C. 2015. Electrostatic analysis of bacterial expansins Proteins: Structure, Function and Bioinformatics, 83, 215-223.

Armenta-Medina,D. Segovia,L. Perez-Rueda,E. 2014. Comparative genomics of nucleotide metabolism: a tour to the past of the three cellular domains of life BMC Genomics, 15, 800.

Brambila-Tapia,A.J. Perez-Rueda,E. 2014. A functional and phylogenetic comparison of quorum sensing related genes in Brucella melitensis 16M Journal of Microbiology, 52, 709-715.

Brambila-Tapia,A.J. Armenta-Medina,D. Rivera-Gomez,N. Perez-Rueda,E. 2014. Main Functions and Taxonomic Distribution of Virulence Genes in Brucella melitensis 16 M PLoS ONE, 9, e100349.

Avila-Mendoza,J. Carranza,M. Perez-Rueda,E. Luna,M. Aramburo,C. 2014. Characterization of pituitary growth hormone and its receptor in the green iguana (Iguana iguana) General and Comparative Endocrinology, 203, 281-295.

Freyre-Gonzalez,J.A. Manjarrez-Casas,A.M. Merino,E. Martinez-Nunez,M. Perez-Rueda,E. Gutierrez-Rios,R.M. 2013. Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis BMC Systems Biology, 7, 127.

Martinez-Nunez,M.A. Poot-Hernandez,A.C. Rodriguez-Vazquez,K. Perez-Rueda,E. 2013. Increments and duplication events of enzymes and transcription factors influence metabolic and regulatory diversity in prokaryotes PLoS ONE, 8, e69707.

Balderas-Martinez,Y.I. Savageau,M. Salgado,H. Perez-Rueda,E. Morett,E. Collado-Vides,J. 2013. Transcription Factors in Escherichia coli Prefer the Holo Conformation PLoS ONE, 8, e65723 [correction 2013 vol 8 (8)].

Tenorio-Salgado,S. Tinoco,R. Vazquez-Duhalt,R. Caballero-Mellado,J. Perez-Rueda,E. 2013. Identification of volatile compounds produced by the bacterium Burkholderia tropica that inhibit the growth of fungal pathogens Bioengineered, 4, .

Ibarra,J.A. Garcia-Zacarias,C.M. Lara-Ochoa,C. Carabarin-Lima,A. Tecpanecatl-Xihuitl,J.S. Perez-Rueda,E. Martinez-Laguna,Y. Puente,J.L. 2013. Further Characterization of Functional Domains of PerA, Role of Amino and Carboxy Terminal Domains in DNA Binding PLoS ONE, 8, e56977.

Ibarra,J.A. Perez-Rueda,E. Carroll,R.K. Shaw,L.N. 2013. Global analysis of transcriptional regulators in Staphylococcus aureus BMC Genomics, 14, 126.

Huerta-Saquero,A. Evangelista-Martinez,Z. Moreno-Enriquez,A. Perez-Rueda,E. 2013. Rhizobium etli asparaginase II: An alternative for acute lymphoblastic leukemia (ALL) treatment Bioengineered, 4, 30-36.

Libros y capítulos recientes

Hernandez-Montes,G. Armenta-Medina,D. Perez-Rueda,E. 2013. Evolution of Metabolism: A Network Perspective of the Amino Acid Biosynthesis Pathways en: Dubitzky,W.e.a. Encyclopedia of Systems Biology. Springer. pags. 687-692


Divulgación

Perez-Rueda,E. Santos-Zavaleta,A. Patino-Guerrero,E.A. 2012. Lo que hay detrás de las biopelículas bacterianas ¿perjudiciales o benéficas? Hypatia, 43, .

Perez-Rueda,E. 2011. Lo conocido de los desconocidos microbios llamados "Arqueas". Hypatia, 40, .

* Indica publicación con otra institución de adscripción



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